PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.24093s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 194aa MW: 21608.9 Da PI: 6.426 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 77.8 | 2.9e-24 | 16 | 80 | 13 | 66 |
TCP 13 TkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........s 66 T+ R RR+Rl+++caa++F+L++eL f++d++t+ WLl++a+pai ++tg Cagra.24093s0001.1.p 16 TSSKDRHRRIRLPVTCAAQVFQLTQELCFKTDGETVGWLLRNAEPAILAATGHgldttsdetsnH 80 78889************************************************665443322220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.372 | 1 | 65 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.5E-21 | 18 | 111 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MDLRNNTECK ARRTPTSSKD RHRRIRLPVT CAAQVFQLTQ ELCFKTDGET VGWLLRNAEP 60 AILAATGHGL DTTSDETSNH FIHSYMNIHN CSNISFGNSY NYSCTIDNSV HYADTSGLVS 120 HRRENITGHH GMVFPGATMP EYGPSTGFSE NLMVNHNRPG MVRPSAPQPQ PQQQPDDFDE 180 VETVMAEPAY YHP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.24093s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292943.2 | 1e-130 | transcription factor TCP16 | ||||
Swissprot | Q9M1U4 | 3e-31 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | D7LNL1 | 1e-77 | D7LNL1_ARALL; Uncharacterized protein | ||||
STRING | Cagra.24093s0001.1.p | 1e-145 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16163 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 5e-34 | TCP domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.24093s0001.1.p |
Publications ? help Back to Top | |||
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