PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2374s0008.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 591aa MW: 66440.2 Da PI: 4.3638 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 431 | 472 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r rW++e+ e+++++ +++G++ + I r ++ +Rt++q k+++ Cagra.2374s0008.2.p 431 RTRWSKEDTEIFYQGLREFGSN-LSFIQRLFP-NRTREQMKLKF 472 78******************99.*********.******99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 2.9E-23 | 424 | 508 | No hit | No description |
SuperFamily | SSF46689 | 4.49E-9 | 425 | 479 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.218 | 429 | 480 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-7 | 430 | 478 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 431 | 472 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-5 | 433 | 473 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MDFDFDDQPS DHTAPAVRAG ARFKPKGRPQ PKKKQVSFST TQTTLPTNVA KEKISTPSED 60 SVSLDGSTSI PSNVLPSEIN VPDNGTINQS TIETISEENV DVFSREVHWS RDASVLRACN 120 HVDLGGERCD GGEEAASAFP DDPRTQDSTI FRDFVTPETG EDEGRLDMET LDIIQEEGTT 180 SSYVQHTGKF QPKPRLIDTV VEEPERHYSV GGTGYFSMDT NDPELMVNME SRNGFSTYGH 240 LQEEELNVPE APRETVPEME AQNASGGWDN HTGTGEEENG FGNTFEEERS GRERKKGKSK 300 GARKRKNTSE EAPNKSSEKP EKKFKHSSRR QKRTLETELL ETPDEEIRSL PIRDMLRLVE 360 YKEWMAKKEA KGGVVPPTQE STMNASGSQY SSQGFDEEDD FGMESSEYQE TNVVKPDSPV 420 NYQTYMNKTS RTRWSKEDTE IFYQGLREFG SNLSFIQRLF PNRTREQMKL KFKLEERRYP 480 LKINDALSSR PEVLIHFPKV IKKLQEEAAA AKEAEEEEEE AGAEAETNDA PENEEEPEKP 540 EETKRASDGV DATKESDGGN IENGVRSDGG DECDDNEGDD DFWNSYKSDM * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2374s0008.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283385.1 | 0.0 | uncharacterized protein LOC17879919 | ||||
Refseq | XP_023635539.1 | 0.0 | uncharacterized protein LOC17879919 | ||||
Refseq | XP_023635540.1 | 0.0 | uncharacterized protein LOC17879919 | ||||
TrEMBL | R0GHJ6 | 0.0 | R0GHJ6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2374s0008.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 0.0 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2374s0008.2.p |