PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2374s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 591aa    MW: 66440.2 Da    PI: 4.3638
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2374s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08431472144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          r rW++e+ e+++++ +++G++  + I r ++ +Rt++q k+++
  Cagra.2374s0008.1.p 431 RTRWSKEDTEIFYQGLREFGSN-LSFIQRLFP-NRTREQMKLKF 472
                          78******************99.*********.******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.9E-23424508No hitNo description
SuperFamilySSF466894.49E-9425479IPR009057Homeodomain-like
PROSITE profilePS512939.218429480IPR017884SANT domain
SMARTSM007171.1E-7430478IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-5431472IPR009057Homeodomain-like
CDDcd001671.69E-5433473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDFDFDDQPS DHTAPAVRAG ARFKPKGRPQ PKKKQVSFST TQTTLPTNVA KEKISTPSED  60
SVSLDGSTSI PSNVLPSEIN VPDNGTINQS TIETISEENV DVFSREVHWS RDASVLRACN  120
HVDLGGERCD GGEEAASAFP DDPRTQDSTI FRDFVTPETG EDEGRLDMET LDIIQEEGTT  180
SSYVQHTGKF QPKPRLIDTV VEEPERHYSV GGTGYFSMDT NDPELMVNME SRNGFSTYGH  240
LQEEELNVPE APRETVPEME AQNASGGWDN HTGTGEEENG FGNTFEEERS GRERKKGKSK  300
GARKRKNTSE EAPNKSSEKP EKKFKHSSRR QKRTLETELL ETPDEEIRSL PIRDMLRLVE  360
YKEWMAKKEA KGGVVPPTQE STMNASGSQY SSQGFDEEDD FGMESSEYQE TNVVKPDSPV  420
NYQTYMNKTS RTRWSKEDTE IFYQGLREFG SNLSFIQRLF PNRTREQMKL KFKLEERRYP  480
LKINDALSSR PEVLIHFPKV IKKLQEEAAA AKEAEEEEEE AGAEAETNDA PENEEEPEKP  540
EETKRASDGV DATKESDGGN IENGVRSDGG DECDDNEGDD DFWNSYKSDM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2374s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283385.10.0uncharacterized protein LOC17879919
RefseqXP_023635539.10.0uncharacterized protein LOC17879919
RefseqXP_023635540.10.0uncharacterized protein LOC17879919
TrEMBLR0GHJ60.0R0GHJ6_9BRAS; Uncharacterized protein
STRINGCagra.2374s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein