PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.2350s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 536aa MW: 60092.4 Da PI: 5.8573 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.4e-08 | 336 | 373 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + Cagra.2350s0011.1.p 336 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 373 664459******************************88 PP | |||||||
2 | BELL | 127.8 | 3.7e-41 | 202 | 273 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi Cagra.2350s0011.1.p 202 ERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 273 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.9E-73 | 137 | 271 | IPR006563 | POX domain |
Pfam | PF07526 | 2.6E-49 | 143 | 270 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.758 | 314 | 377 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.55E-11 | 317 | 378 | No hit | No description |
SMART | SM00389 | 1.0E-8 | 317 | 381 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-16 | 318 | 383 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 320 | 382 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 334 | 373 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 536 aa Download sequence Send to blast |
MENYPETQFL PGNSMIHMNA TVSYSQELAS RERTEANNNV SASQERQALS RFGQVSQMQD 60 ADQDFGSWRD EASDRNGFQL MSAMASSTAH PHTGQGLSLS LGSQILPGIH QSMAPRAEHF 120 RGNEYATQSF PGGNQNLDVV RTIPNSKYLK AAQQLLDEAV NVRKALKQFQ AEGDKNNEKP 180 QEPDHNTQDS STNAPPEISQ SERQEMQSKL TKLLSMLDEV DRRYKQYYQQ MQIVVSSFDV 240 IAGYGAAKPY TALALQTISR HFRSLRDAIS GQILVIRKSL GEQQDGSDGK RVGIISRLKY 300 VDQHLRQQRG FMQPQAWRPQ RGLPENSVLI LRAWLFEHFL HPYPKDSDKI MLARQTGLSR 360 GQVSNWFINA RVRLWKPMVE EIYKEEFTEN DSNSSSENTP KTSEIGPAAA DDEDRAQDFS 420 HDQTKTDHGH DGYGEETCGM VQGSQMDDRR FMAVEPTYHV AEMSRLGRGA VSLTLGLQNS 480 NGHDNVVAMS STEAYNNSFP GVDIYENAIP QEYVNPGSRS ENRTSSSQLV HDFVA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 323 | 381 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 323 | 381 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.2350s0011.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT012291 | 0.0 | BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283499.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
Refseq | XP_023634761.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
Swissprot | O65685 | 0.0 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | R0F3V1 | 0.0 | R0F3V1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2350s0011.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34610.2 | 0.0 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.2350s0011.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|