PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.23492s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 368aa    MW: 41375.1 Da    PI: 7.9937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.23492s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Cagra.23492s0001.1.p 14 KGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                          678*******************************************97 PP
2Myb_DNA-binding49.87.8e-1667110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+++++E+ l++++++ lG++ W+ Ia +++ gRt++++k++w++
  Cagra.23492s0001.1.p  67 RGAFSQDEESLIIELHAALGNR-WSQIATRLP-GRTDNEIKNFWNS 110
                           89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.515961IPR017930Myb domain
SuperFamilySSF466894.4E-2912108IPR009057Homeodomain-like
SMARTSM007177.6E-131363IPR001005SANT/Myb domain
PfamPF002494.7E-161461IPR001005SANT/Myb domain
CDDcd001677.42E-111761No hitNo description
PROSITE profilePS5129425.90662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-2665116IPR009057Homeodomain-like
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467111IPR001005SANT/Myb domain
CDDcd001677.27E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT DNEIKNFWNS CLKKKLRRKG  120
IDPTTHKPLV TTSELHQTLN VIDQKLTSSE VVKSTGSINN NTHDHQSMVV SNQSGPWWFP  180
AATTTTTTTN QNAAFCFSSS NTITPTVSDQ IVSLISSMST SSSPTPMTSN FNPAAPNNWE  240
LQQLNYCNTV PSQTNSIYSA FFGNNHYTEA SQIMNANNNN NNPVLDHHHQ DMKSWASEIL  300
HYTEQNQTSE TCLETEVKPD IAKYYWRSAS SSSSPNQEAA TLLHDTDVEV YGKNLQKLNS  360
MVFDQSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.23492s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0997770.0AY099777.1 Arabidopsis thaliana transcription factor ATMYB4 (At5g26655) mRNA, complete cds.
GenBankAY5196290.0AY519629.1 Arabidopsis thaliana MYB transcription factor (At5g26660) mRNA, complete cds.
GenBankBT0087400.0BT008740.1 Arabidopsis thaliana At5g26655 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287991.10.0transcription factor MYB86 isoform X1
SwissprotQ8LPH60.0MYB86_ARATH; Transcription factor MYB86
TrEMBLR0GVG00.0R0GVG0_9BRAS; Uncharacterized protein
STRINGCagra.23492s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.10.0myb domain protein 86