PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2337s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 209aa    MW: 23979.2 Da    PI: 10.3986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2337s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-152067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l   v ++G g+W+tI+   g+ R +k+c++rw +yl
  Cagra.2337s0007.1.p 20 KGLWSPEEDEKLRSHVLKYGHGCWSTIPILTGLQRNGKSCRLRWVNYL 67
                         678*******************************************97 PP
2Myb_DNA-binding49.59.6e-1675117347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +T+eE+  lv ++ +lG++ W+ I++ ++ gRt++++k++w++ 
  Cagra.2337s0007.1.p  75 TFTKEEETTLVSLHSMLGNK-WSQISKFLP-GRTDNEIKNYWHSN 117
                          79******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-221470IPR009057Homeodomain-like
PROSITE profilePS5129416.4891567IPR017930Myb domain
SMARTSM007172.5E-111969IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-3019114IPR009057Homeodomain-like
PfamPF002491.5E-132067IPR001005SANT/Myb domain
CDDcd001679.23E-102367No hitNo description
PROSITE profilePS5129424.49168122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2371121IPR009057Homeodomain-like
SMARTSM007176.8E-1572120IPR001005SANT/Myb domain
PfamPF002492.2E-1474117IPR001005SANT/Myb domain
CDDcd001671.30E-1075118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVYKSEKPNR KMKSKEKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPILT GLQRNGKSCR  60
LRWVNYLRPG LKKCTFTKEE ETTLVSLHSM LGNKWSQISK FLPGRTDNEI KNYWHSNLKK  120
GVSLTKHVTT RTPQTSSVKS SLEALQSTTE RSSSSISVGE TFNAQTPSFL PSLVFSEWLD  180
YSLFTDQSPQ KTSYVQNSVV PEERRFTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-272012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2337s0007.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195960.0AY519596.1 Arabidopsis thaliana MYB transcription factor (At3g48920) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292379.11e-149transcription factor LAF1
SwissprotQ9M0K42e-58LAF1_ARATH; Transcription factor LAF1
TrEMBLR0FRN71e-147R0FRN7_9BRAS; Uncharacterized protein
STRINGCagra.2337s0007.1.p1e-152(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-111myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]