PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2240s0021.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 288aa MW: 31624.7 Da PI: 5.9805 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.1 | 1.7e-12 | 52 | 96 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +g +t q++s+ qky Cagra.2240s0021.2.p 52 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 96 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.94E-16 | 46 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.942 | 47 | 101 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-6 | 50 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-18 | 50 | 99 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.6E-10 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-10 | 52 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-7 | 54 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MTSTNPVVAE ALPSESITDA TEMNTTVSSV STEAGEAPEK KVRKAYTITK SRESWTEGEH 60 DKFLEALQLF DRDWKKIEDF VGSKTVIQIR SHAQKYFLKV QKNGTLAHVP PPRPKRKAAH 120 PYPQKASKNA QMSLHVSMSF PTQINNLPGY SSWDDDTSAL LNIAVSGVIP PEDELDTFCG 180 PEVVIESNDI PSASSPSASG IGSSSRTLSD SQDLRLAKQA PSMHGLPDFA EVYNFIGSVF 240 DPDSKGRMKK LKEMDPINFE TVLLLMRNLT VNLSNPDFEP ARKVLNT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00484 | DAP | Transfer from AT5G02840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2240s0021.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317012 | 0.0 | AK317012.1 Arabidopsis thaliana AT5G02840 mRNA, complete cds, clone: RAFL16-09-C03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023637464.1 | 0.0 | protein REVEILLE 4 isoform X2 | ||||
Swissprot | Q6R0G4 | 0.0 | RVE4_ARATH; Protein REVEILLE 4 | ||||
TrEMBL | R0FGY3 | 0.0 | R0FGY3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2240s0021.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02840.3 | 1e-163 | LHY/CCA1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2240s0021.2.p |
Publications ? help Back to Top | |||
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