PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2238s0052.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 416aa    MW: 47852.2 Da    PI: 6.0144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2238s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-11365411347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           WT+eE e l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
  Cagra.2238s0052.1.p 365 FWTPEEVEALREGVKEYGKS-WKVIKNSNPvvlADRTEVDLKDKWRNL 411
                          5*****************88.************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415358415IPR017930Myb domain
SuperFamilySSF466891.25E-12360412IPR009057Homeodomain-like
SMARTSM007171.1E-8362414IPR001005SANT/Myb domain
CDDcd116601.58E-15364411No hitNo description
Gene3DG3DSA:1.10.10.605.9E-12366411IPR009057Homeodomain-like
PfamPF002492.7E-9366411IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEKWVAEFFL RRQQNPRVYA PSLLSALKPV DSDDCVKFKI TAVLRDISNS LIRGTVDEGM  60
LDLLELLEKL LLQEHSVIME SLKSAYCWTA AECSLRFMWP MTASDGFFGD ALERIWKKRI  120
GMLKERESDL VSRELLNWEK YLNKAFEEPE IYKKIRQTNI RYNAISHLTQ LLKEQWALLG  180
CSSLESEARK RLLKCKDPPS ASRQRGCYHF GRAGDTIDNT NEELETGREA RNGSDRENAN  240
DVEEVGGVEN PHRVDKVTDQ EHEYEPSVSK GDVTVARELK DVLLEIQRLI DLSTMQEQEP  300
GNAMDQSANV TPQHDGENRT EAEDSEGTSS SRRVRPHLPT PEPLNVSPLK KVRLERPRPR  360
RLMKFWTPEE VEALREGVKE YGKSWKVIKN SNPVVLADRT EVDLKDKWRN LFGRQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2238s0052.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303695.20.0uncharacterized protein LOC17898781, partial
TrEMBLR0II970.0R0II97_9BRAS; Uncharacterized protein
STRINGCagra.2238s0052.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.10.0TRF-like 5