PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2238s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | AP2 | ||||||||
Protein Properties | Length: 321aa MW: 36609.5 Da PI: 5.329 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.1e-12 | 56 | 112 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d s+n ++k+ + g ++ ++ Aa+a++ a++k++g Cagra.2238s0017.1.p 56 SVHRGVTRHRWTGRYEAHLWDkNSWNDtQTKKGRQGAYDEEDAAARAYDLAALKYWG 112 689******************88888888888888*****99*************98 PP | |||||||
2 | AP2 | 42.7 | 1.4e-13 | 144 | 189 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r+++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Cagra.2238s0017.1.p 144 RRHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 189 89999*******99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.64E-14 | 56 | 121 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-11 | 57 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-18 | 57 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-8 | 57 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.426 | 57 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-5 | 58 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.779 | 138 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-15 | 139 | 199 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-9 | 144 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-15 | 145 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.24E-11 | 145 | 199 | No hit | No description |
SMART | SM00380 | 3.4E-21 | 145 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-5 | 179 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MYIAVEVSPV MEEITRRSKK TLVENETGDE TAGQVVIKAK RKRRSQPREA PPQRSSVHRG 60 VTRHRWTGRY EAHLWDKNSW NDTQTKKGRQ GAYDEEDAAA RAYDLAALKY WGRDTILNFP 120 LCNYEEDMKE MESQSKEEYI GSLRRHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAAIAY 180 DIAAIEYRGL NAVTNFDISR YLKLPAPENL TDSAKHPLEI PRSDLSPNHE SELSQSQSSS 240 DDNDDRKTKL LKSSPLNAEE LVGPSTPPEI APPRRSFPED IQTYFGCQNS GKLTTEEDDV 300 IFGDLDSFLT PDFYSELHDC * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2238s0017.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045915 | 1e-138 | AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds. | |||
GenBank | AY133880 | 1e-138 | AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645597.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Swissprot | Q94AN4 | 0.0 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | R0GSI4 | 0.0 | R0GSI4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2238s0017.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-172 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2238s0017.1.p |
Publications ? help Back to Top | |||
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