PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2231s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 290aa    MW: 33427.4 Da    PI: 5.9241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2231s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.8e-152168148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd ll +++   G g+W++ a+  g++Rt+k+c++rw++yl
  Cagra.2231s0026.1.p 21 KGPWTLEEDTLLNNYISHNGEGRWNLLAKSSGLKRTGKSCRLRWLNYL 68
                         79********************************************97 PP
2Myb_DNA-binding52.41.2e-1674117146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Cagra.2231s0026.1.p  74 RGNLTPQEQLLILELHSKWGNR-WSKIAKYLP-GRTDNDIKNYWRT 117
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0321668IPR017930Myb domain
SuperFamilySSF466894.49E-3019115IPR009057Homeodomain-like
SMARTSM007172.5E-122070IPR001005SANT/Myb domain
PfamPF002497.4E-142168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-212275IPR009057Homeodomain-like
CDDcd001679.78E-92368No hitNo description
PROSITE profilePS5129426.01569123IPR017930Myb domain
SMARTSM007172.6E-1573121IPR001005SANT/Myb domain
PfamPF002491.0E-1574117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2376122IPR009057Homeodomain-like
CDDcd001671.84E-1178117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSNILKKRCN NGEEEGVEQR KGPWTLEEDT LLNNYISHNG EGRWNLLAKS SGLKRTGKSC  60
RLRWLNYLKP DIKRGNLTPQ EQLLILELHS KWGNRWSKIA KYLPGRTDND IKNYWRTRVQ  120
KQARQLNIDS NSHKFLEVVR SFWVPRLIHK MEDNSNTNSK ATPPDLLGPV LQDNSFPHDF  180
SNIDFSTSMS VDLKKTSQFM VMESSSDLET TCSLYLDGSR GSSSQCVSEG YSSFPCLEEE  240
YMVATMGSSD ILQLQDCHVA DSTYEEDVTQ DPMWNMDDIW QFKEYAHYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24211237108B-MYB
1gv2_A1e-24211234105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-24211234105C-Myb DNA-Binding Domain
1msf_C1e-24211234105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2231s0026.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644844.10.0transcription factor MYB62
SwissprotQ9C9G71e-104MYB62_ARATH; Transcription factor MYB62
TrEMBLR0GKF70.0R0GKF7_9BRAS; Uncharacterized protein
STRINGCagra.2231s0026.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-173myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]