PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2179s0053.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 1059aa MW: 118379 Da PI: 9.7429 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1.1e-07 | 44 | 76 | 3 | 36 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 WT E e+++da +++G + Wk++a+ + + R+ Cagra.2179s0053.2.p 44 QWTRVELERFYDAYRKHGHE-WKKVAAAVRNSRS 76 6*******************.*****99886666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.89E-6 | 43 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-5 | 44 | 81 | IPR001005 | SANT/Myb domain |
SMART | SM01135 | 2.5E-60 | 641 | 742 | IPR033471 | DIRP domain |
Pfam | PF06584 | 4.0E-32 | 641 | 741 | IPR033471 | DIRP domain |
SMART | SM00333 | 0.0014 | 728 | 785 | IPR002999 | Tudor domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1059 aa Download sequence Send to blast |
MAPVRKSRSV NKRFTNESSP GKDAGSSRKN KQRKKKLSDK LGPQWTRVEL ERFYDAYRKH 60 GHEWKKVAAA VRNSRSIDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE 120 GEGHDASEVA RKQQKRKRAK PQLSDSREEV DIKHGVASTD GCLTFLKQAR ANGTQRHATG 180 KRTPRVPVQN SYMRDDRECF TPPNKRARKQ FDANDDVAHF LALALTDASR RGGSSKVSES 240 PNRRTELNAS SPIKSWGNMS RTRKSQSKHC DNSVFEEWVG SSQERKLESD KDTALLGDME 300 GVSELEAARK GKRFYKKRVK VEVEEAEGND SDDNGEACSA TEGLRIKSQR RKAAMEASRG 360 KYLSRSAKKR DNKLTSGDEF DALQALAELS ASMIPATLME SESSARLKEE RTEYNMDERS 420 STPEATSSSS NGEKANAEPD DDSLLHAISS GENANKRKPK PSRQASTDCD VVPTGKLQPQ 480 TSGSLRRKRI PKVLGDEAPA DVSQKKITNK KELSQDENNM KSSVRTKRVG QGPAQSKQLK 540 TVKALDEFTT TSDKNRPEMD VVASTKQVSD SCPASVSQKP PNKRKKSLKK SLQERAKSSE 600 TIHKASRSSR SLSEQELLLK DKMSTSLSYP LARRRCIFEW FYSAIDHPWF AKMEFVDYLN 660 HVGLGHIPRL TRLEWSVIKS SLGRPRRFSE RFLQEEREKL KQYRESVRKH YTELRTGARE 720 GLPTDLARPL SVGNRVIAIH PKTREIHDGK ILTVDHNKCN VLFDDLGVEL VMDIDCMPLN 780 PLEYMPEGLR RQIDKCLSMK KEAQLSGNSN IGVSVIFPPC GLENVSFSMN PPLNQGDIIA 840 PILHGKVSTN TSSPQQTNHS YITTYNKARE AEIQRALALQ HASDEKEMEP EMLEIVKGSK 900 TRAQAMVDAA IKAASSVKEG EDANKMIQEA LDLIGKHQPL RGFRFKHHEH VNGNIEHHQN 960 PSPSDTSETM ANNDFNSQDG SEKNEAQMPS DLITSCVATW LMIQMCTERQ YPPADVAQLI 1020 DAAITSLQPR CPQNLPIYRE IQTCMGQIKT QILALVPT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 140 | QKRKRAKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2179s0053.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ583496 | 0.0 | AJ583496.1 Arabidopsis thaliana mRNA for Arabidopsis always early 2 protein (Ataly2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296886.1 | 0.0 | protein ALWAYS EARLY 2 isoform X1 | ||||
Refseq | XP_006296887.1 | 0.0 | protein ALWAYS EARLY 2 isoform X1 | ||||
Swissprot | Q6A333 | 0.0 | ALY2_ARATH; Protein ALWAYS EARLY 2 | ||||
TrEMBL | R0HJB2 | 0.0 | R0HJB2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2179s0053.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-142 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2179s0053.2.p |
Publications ? help Back to Top | |||
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