PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2179s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 454aa    MW: 49639.1 Da    PI: 4.5956
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2179s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.58.5e-38138236298
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                          lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++f
  Cagra.2179s0002.1.p 138 LFQRLWTDEDEIELLRGFLDYmTTHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTF 227
                          79*******************888999999999********************************************************* PP

               DUF573  90 elskkiWgs 98 
                          e+s+kiW++
  Cagra.2179s0002.1.p 228 EISRKIWNQ 236
                          *******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-34139235IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEEG GVGESDTDED LRDNDDVVLP ESNDVEAEAE AEAEDDDPEE  60
EDLNSPSTSS LAMVSTISTT AVVSGTPTTA SSTGAVTVAL PAGSAVPVSV IPVDSDPKWH  120
RMTEIVHQRP PIDDSRRLFQ RLWTDEDEIE LLRGFLDYMT THRGSSSHPP DTAPFYEQIK  180
SKLQLDFNKN QLVEKLRRLK KKYRNVMSKI SSGKEVFFKS PHDQSTFEIS RKIWNQTGKI  240
IGFEDNNVMD FEETNNHHNT NGNYSTFNSP VSNPELDSEN GIEKKLTMSS SSGSRKRSRS  300
RIGKIEEDNK PILAPCDGHI PNAASNVNLN ETAAAISIGG NLGGLIEETV KNCVSPVIKE  360
LMNGTTSMMM AAMGGGFPGS GGGAHGFGSL SPMFTRPLNF GFGVEGGGNK AVAEERWRKQ  420
QILELEVYSR RLELVQEQIR TTLNELKTMP SGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2179s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0701360.0AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297660.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGCagra.2179s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.10.0DNA-binding storekeeper protein-related transcriptional regulator