PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2175s0023.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 687aa    MW: 76338.8 Da    PI: 6.4681
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2175s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-192879556
                         SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++t++q+++Le+ F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Cagra.2175s0023.1.p 28 HRHTPHQIQRLESTFNECQHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQKK 79
                         689**********************************************988 PP
2START150.21.8e-472184392206
                          HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SE CS
                START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddke...qWdetlak 78 
                          +a +a++el+++ + +ep+W +     + ++ e++ ++ +  +         ++ea+r sgvv+ ++ +lv  l+d+ +    + + +a+
  Cagra.2175s0023.1.p 218 IAVTAMEELLRLLQTNEPLWITTDgcREVINLESYENLFPRSSsnggkkneLRMEASRSSGVVFTNALTLVDMLMDSVKsadFFPTIVAA 307
                          6889*******************9997888888888876655568899******************************99988999999* PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                           +tl+vissg       al+lm  elq+lsp+v+ R+f ++Ry++q + g+w+i+ vS + +q++++     R+ ++pSg+li+++sng+
  Cagra.2175s0023.1.p 308 SKTLAVISSGlrgnhgDALHLMIEELQVLSPMVAtREFCVLRYCQQIEHGTWAIANVSYEFPQFVSQ----SRSYRFPSGCLIQDMSNGY 393
                          *****************************************************************95....56666************** PP

                          EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          skvtwvehv+ +++ p h++++  v++gla+ga +w +tlqr ce+
  Cagra.2175s0023.1.p 394 SKVTWVEHVEFEEQEPiHEIFKDSVHKGLAFGAERWISTLQRMCER 439
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.8E-191181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-211375IPR009057Homeodomain-like
PROSITE profilePS5007117.752181IPR001356Homeobox domain
SMARTSM003894.1E-182285IPR001356Homeobox domain
PfamPF000467.6E-172879IPR001356Homeobox domain
CDDcd000862.38E-182882No hitNo description
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PROSITE profilePS5084848.029208442IPR002913START domain
SuperFamilySSF559614.53E-31209440No hitNo description
CDDcd088758.91E-105212438No hitNo description
SMARTSM002346.1E-33217439IPR002913START domain
PfamPF018529.5E-40218439IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-8260437IPR023393START-like domain
SuperFamilySSF559611.76E-18457677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010091Biological Processtrichome branching
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MNMEFFGDSQ IHDGSETDKK NKKKKRFHRH TPHQIQRLES TFNECQHPDE KQRNQLSREL  60
GLAPRQIKFW FQNRRTQKKA QHERADNCAL KEENDKIRCE NIAIREAIKH AICPNCGDSP  120
VNEDSYFDEQ KLRIENAQLR DELERVSSIA AKFIGRPISH LPPLLNPMHI SPLELFHSGP  180
SLDFDLLPGS CSSMALPTLP SQPNLVLSEM DKSLMTNIAV TAMEELLRLL QTNEPLWITT  240
DGCREVINLE SYENLFPRSS SNGGKKNELR MEASRSSGVV FTNALTLVDM LMDSVKSADF  300
FPTIVAASKT LAVISSGLRG NHGDALHLMI EELQVLSPMV ATREFCVLRY CQQIEHGTWA  360
IANVSYEFPQ FVSQSRSYRF PSGCLIQDMS NGYSKVTWVE HVEFEEQEPI HEIFKDSVHK  420
GLAFGAERWI STLQRMCERF TEPATSSLDL GGVIPSPEGK RSIMRLAHRM VSNFCLSVGT  480
SNNTRSTVVS GLDEFAIRVT SHKSLHEPNG MVLCAATSFW LPNSPLNVFN FLKDERTRPQ  540
WDVLSNGNPV QEVANIANGS NPGNCISVLR GFNVSSSQNN MLILQESCID SSSAALVIYT  600
PVDLPALNIA MSGQDTSCIP ILPSGFAISP DGSSKGGGSL ITVGFQIMVS GLQPAKLNME  660
SMETVNNLIN TTVHHIKTTL NCPSTA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2175s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934650.0AB493465.1 Arabidopsis thaliana At1g17920 mRNA for hypothetical protein, partial cds, clone: RAAt1g17920.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306921.10.0homeobox-leucine zipper protein HDG12
SwissprotQ9LMT80.0HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLR0IBH00.0R0IBH0_9BRAS; Uncharacterized protein
STRINGCagra.2175s0023.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]