PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2117s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YA
Protein Properties Length: 270aa    MW: 29676.4 Da    PI: 9.353
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2117s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA90.32.5e-28134186258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ++YVNaKQy++I++RRq+Rak+e+   l +++rkpy+h+SRh hA+rRpRgsgGrF
  Cagra.2117s0012.1.p 134 GTIYVNAKQYHGIIRRRQSRAKAEK---L-SRCRKPYIHHSRHLHAMRRPRGSGGRF 186
                          689*********************9...6.888***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-30131189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.873132189IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-24135186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860137157IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQTEELLSPP QTPWWNAFGS QPLTTESLSG DASDSFAGVK AVTPETEQDV VNKESSTTLF  60
TLSPGGGKSS QDVPKPHVAF TMQSACFEFG FARPTIYTKH PHVEQYCGVV SAYGSQRSSG  120
RVMLPLKMET EEDGTIYVNA KQYHGIIRRR QSRAKAEKLS RCRKPYIHHS RHLHAMRRPR  180
GSGGRFLNTK KADATKPSKP SSSQSSEVFH PENKTMNSSR EANMPNLSGS EVTSMDYFLS  240
SSVYTPSGMV MPLKWNAAAM DIGCCNLNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-16136202574NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2117s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0846430.0AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288452.10.0nuclear transcription factor Y subunit A-10
RefseqXP_023637202.10.0nuclear transcription factor Y subunit A-10
SwissprotQ8LFU01e-179NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBLR0H8U30.0R0H8U3_9BRAS; Uncharacterized protein
STRINGCagra.2117s0012.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-175nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]