PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.21102s0003.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 316aa MW: 36951.7 Da PI: 4.3468 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.1 | 5.2e-14 | 72 | 156 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k +k + ss++++f++l+ Cagra.21102s0003.2.p 72 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVcEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 156 **********************************9877999***********************977776.478999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-19 | 71 | 157 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MYSRPIPKRH AYYHEEEDEQ EEDEVEGDDE EPQGGGYSRG NERFQKRQKP NKPVVSGYDF 60 AGPSDGKVKY DWREQEAFVL LEVWGDRFLQ LGRRSLRNED WNEVAEKVCE ELRMEKSETQ 120 CRRMIDNLKR KYRKEKIKVE KSGLGSSKWA FFNKLDMLLC VSPKSDLGLA CGVDSGEFVF 180 MNTKVYLDKS NGFDEMMDSP GDSEEEEDDE EEVDYERKKF NDAASYKMLA DSVEKFGKIY 240 EKMEKSKKEQ MKELEKMRAD FQKDLELQKK QIVDRAQSEI ARLREEEENN HGDAGDDESE 300 DEEMENDSDV NLSDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.21102s0003.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB020746 | 0.0 | AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298066.1 | 0.0 | trihelix transcription factor ASIL2 isoform X1 | ||||
Refseq | XP_023641482.1 | 0.0 | trihelix transcription factor ASIL2 isoform X2 | ||||
TrEMBL | R0HMM0 | 0.0 | R0HMM0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.21102s0003.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 1e-149 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.21102s0003.2.p |