PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.21102s0003.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 339aa MW: 39620.6 Da PI: 4.3756

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.21102s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44	6e-14	95	179	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k +k + ss++++f++l+ Cagra.21102s0003.1.p 95 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVcEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 179 ********************************9877999*******************977776.478999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-19	94	180	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGDSEDETGY PKKFYSLNRQ SHPMYSRPIP KRHAYYHEEE DEQEEDEVEG DDEEPQGGGY 60 SRGNERFQKR QKPNKPVVSG YDFAGPSDGK VKYDWREQEA FVLLEVWGDR FLQLGRRSLR 120 NEDWNEVAEK VCEELRMEKS ETQCRRMIDN LKRKYRKEKI KVEKSGLGSS KWAFFNKLDM 180 LLCVSPKSDL GLACGVDSGE FVFMNTKVYL DKSNGFDEMM DSPGDSEEEE DDEEEVDYER 240 KKFNDAASYK MLADSVEKFG KIYEKMEKSK KEQMKELEKM RADFQKDLEL QKKQIVDRAQ 300 SEIARLREEE ENNHGDAGDD ESEDEEMEND SDVNLSDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.21102s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB020746	0.0	AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298066.1	0.0	trihelix transcription factor ASIL2 isoform X1
TrEMBL	R0HMM0	0.0	R0HMM0_9BRAS; Uncharacterized protein
STRING	Cagra.21102s0003.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-168	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cagra.21102s0003.1.p