PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2108s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YA | ||||||||
Protein Properties | Length: 349aa MW: 38423.6 Da PI: 10.2003 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93.7 | 2.2e-29 | 190 | 249 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ +kkl++++rkpy+h+SRh hAlrRpRgsgGrF Cagra.2108s0005.1.p 190 GTIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSTRCRKPYMHHSRHLHALRRPRGSGGRF 249 689*********************9999*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.9E-31 | 187 | 252 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.158 | 188 | 252 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-23 | 191 | 249 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.8E-21 | 191 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.8E-21 | 226 | 249 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MNLCFLFWNR YGFLTIGLFS LPLPRNLKFS LYSLYTLYSI TPSVNKSLGN IIWKMAMQTV 60 REGLFSAPQT SWWNAFGSQP LAQQSLAGDS DSFAGVKAGS AGETEQGVVK QSNSATHLAF 120 SLGDVKSSRV VSKSHGAVFS MQSPSLELGF THPPIYAKYP YGEQQYYGVV SAYGSQSRVM 180 LPLNMETEDG TIYVNSKQYH GIIRRRQSRA KAAAVLDQKK LSTRCRKPYM HHSRHLHALR 240 RPRGSGGRFL NTKSQNLDKS GNNGKKADGD KQQIQSEPKP QQSNSQNSEV VHPESGIINL 300 SNGLLNVTGS EVTSMNYFLS SPVHSLGGMV MPSKWIAAMD NSCCNFKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 6e-16 | 189 | 250 | 2 | 60 | HAPB protein |
4g92_A | 6e-16 | 189 | 250 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2108s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228089 | 0.0 | AK228089.1 Arabidopsis thaliana mRNA for putative transcription factor, complete cds, clone: RAFL14-57-G15. | |||
GenBank | BT026062 | 0.0 | BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds. | |||
GenBank | Y13721 | 0.0 | Y13721.1 Arabidopsis thaliana mRNA for Hap2b transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298041.1 | 0.0 | nuclear transcription factor Y subunit A-2 isoform X2 | ||||
Swissprot | Q9M9X4 | 0.0 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | R0HMJ6 | 0.0 | R0HMJ6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2108s0005.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 0.0 | nuclear factor Y, subunit A2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2108s0005.1.p |
Publications ? help Back to Top | |||
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