PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2098s0013.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 280aa MW: 29874.2 Da PI: 8.262

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2098s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.2	7.5e-40	54	155	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++ Cagra.2098s0013.1.p 54 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVAS 143 7*********************9989********************************************************** PP DUF260 90 lkaelallkeel 101 l+ael++++++l Cagra.2098s0013.1.p 144 LQAELSVVQSQL 155 ******9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.216	53	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-39	54	152	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:1900150	Biological Process	regulation of defense response to fungus

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MADQQQRSHN TSDSRRKSLA GKRTSQQTPT TSSLSSGGGA MAATTTTGTG TASPCGACKF 60 LRRKCVSGCI FAPHFGSDQG AARFAAVHKV FGASNVSKLL HHIPVNRRHD AVVTISYEAQ 120 ARLSDPVYGC VSTILALQQQ VASLQAELSV VQSQLINSRV AMANVMQQQT HHQQQQQQQL 180 VVMQQPEYSN NSSASTTLAG AAMNRFTVAA EAAAVSYDVM APTNLEHSLQ PPMLRHQQSR 240 GDHQHEDEEE SGGADFSVAV GSTTVASEVI FPAEGFHRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-40	42	156	1	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-40	42	156	1	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2098s0013.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473854	0.0	AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBank	AK118291	0.0	AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBank	BT008589	0.0	BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299263.1	1e-173	LOB domain-containing protein 20
Swissprot	Q9SRV3	1e-154	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	R0G9E8	1e-171	R0G9E8_9BRAS; Uncharacterized protein
STRING	Cagra.2098s0013.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-124	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Cagra.2098s0013.1.p