PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2093s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | AP2 | ||||||||
Protein Properties | Length: 571aa MW: 62552.4 Da PI: 6.9064 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 191 | 247 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Cagra.2093s0009.1.p 191 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 247 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47 | 6.3e-15 | 292 | 341 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Cagra.2093s0009.1.p 292 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 341 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-15 | 191 | 256 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.04E-19 | 191 | 257 | No hit | No description |
Pfam | PF00847 | 4.2E-9 | 191 | 247 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-23 | 192 | 261 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.57 | 192 | 255 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-12 | 192 | 255 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 193 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 290 | 350 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.13E-24 | 290 | 351 | No hit | No description |
SMART | SM00380 | 1.5E-32 | 291 | 355 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-18 | 291 | 349 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.506 | 291 | 349 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 292 | 341 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 331 | 351 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MNSNNWLAFP LSPTHSSLPP HIHSTSQPSH FNLGLVNDNM DNPFQNQEWN MINPHNGGCG 60 QGGEVPKVAD FLGVSKSDNH QHDHNLVPYN DIHQTNDSDY YFQTNSLLPT VVTCASNTPN 120 NYELQESAHN LQSLTLSMGS TGAAAAAAAT VKASPGETSA DNSSSTTNTS GGAIVEATPR 180 RTLETFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL 240 AALKYWGPST TTNFPITNYE KEVEEMKHMT RQEFVASIRR KSSGFSRGAS MYRGVTRHHQ 300 HGRWQARIGR VAGNKDLYLG TFSTEEEAAE AYDIAAIKFR GLNAVTNFEI NRYDVKAILE 360 SNTLPIGGGA AKRLKEAQAL ESSRKREEMI ALGSNFHQYG APSGSSSVAS SSRLQLQPYP 420 LSIQQPFEHL HHQPLLTLQN NNDMSQYNTN AHDSYSYIQT QLHLHQQQTN NYLQSSSHSS 480 QLYNAYLQSN PGLLHGFISD SNNTSGFLGN NGIGIGSSST VGSSAGEEFP AVKVDYDMPP 540 SGGATGYGGW NTGESIQGSN PGGVFTMWNE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2093s0009.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY506550 | 0.0 | AY506550.1 Arabidopsis thaliana PLETHORA2 (PLT2) mRNA, complete cds. | |||
GenBank | BT020277 | 0.0 | BT020277.1 Arabidopsis thaliana At1g51190 mRNA, complete cds. | |||
GenBank | BT020460 | 0.0 | BT020460.1 Arabidopsis thaliana At1g51190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023646034.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | R0GTX3 | 0.0 | R0GTX3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2093s0009.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3015 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2093s0009.1.p |