PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2093s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | RAV | ||||||||
Protein Properties | Length: 349aa MW: 39707.8 Da PI: 8.1904 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.3 | 6e-11 | 50 | 97 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++ykGV + +g W A+I+ ++r++lg+f +a eAa+a++ a kl+ Cagra.2093s0004.1.p 50 TKYKGVVQQQ-NGHWGAQIYAD-----HRRIWLGTFKSAAEAAAAYDSASIKLR 97 69****9888.8******9993.....4*********************99997 PP | |||||||
2 | B3 | 90.6 | 1.2e-28 | 181 | 277 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+ltpsdv+k++rlv+pkk+a ++ +g+ e+++++++d+ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D Cagra.2093s0004.1.p 181 FQKELTPSDVGKLNRLVIPKKYAVKYmpfisndhnekeMGEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKD 270 99*****************************988777633334999******************************************** PP EEEEEE- CS B3 79 fvvFkld 85 ++vF+ Cagra.2093s0004.1.p 271 IIVFYTC 277 ****954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.23E-12 | 50 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-16 | 51 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-16 | 51 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.174 | 51 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-14 | 51 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-32 | 176 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.4E-27 | 179 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.05E-26 | 180 | 275 | No hit | No description |
PROSITE profile | PS50863 | 12.182 | 181 | 292 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-22 | 181 | 292 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-26 | 181 | 278 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDEMSNEAKT TTETSGSSDS VLPLLKRMKP TLVVAATTNP PALSNTATTT KYKGVVQQQN 60 GHWGAQIYAD HRRIWLGTFK SAAEAAAAYD SASIKLRSFD ANSHRNFPWS DFTVHEPDFQ 120 ECYTTEAVLN MIRDGSYQHK FRDFLRIRSQ IVASINIVGS KQVQGGGDQE SNKCFSCTQL 180 FQKELTPSDV GKLNRLVIPK KYAVKYMPFI SNDHNEKEMG EGVEDVEVVF YDRAMRQWKF 240 RYCYWRSSQS FVFTRGWNGF VKEKNLKEKD IIVFYTCDVP SNAKTLEGQS KNFLMIDVHY 300 FSGNGFMVPE EVNKTARESS DEEIKLKNEE PKSEEKKGGF MLFGVRIQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 7e-25 | 180 | 274 | 13 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2093s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079828 | 0.0 | AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence. | |||
GenBank | AY560883 | 0.0 | AY560883.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g51120) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304572.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Swissprot | Q9C688 | 0.0 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | R0IGJ8 | 0.0 | R0IGJ8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2093s0004.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 0.0 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2093s0004.1.p |