PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1968s0060.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 306aa MW: 34381.8 Da PI: 4.6857

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1968s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.4e-07	249	303	3	48
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 WT+ E++ l +v+ + ++ Wk+I ++ k+R + ++k++w++ l Cagra.1968s0060.1.p 249 LWTAKEEDMLRVGVEIFSTKikknmPWKKILEMGKgvfhKTRNPSDLKDKWRNML 303 6****************************9888***************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.05	242	303	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.0E-7	244	304	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-4	246	305	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.58E-9	246	304	IPR009057	Homeodomain-like
CDD	cd11660	2.66E-9	250	304	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MVIDIEDEIR AEKNHPPIDE DAIALLSSPY SQGETEEIGS VNEKLIEICN AHCDGGDNDF 60 NSAKNFFYSD RNFGNDEICR SFELSNELAC IVCDLLDGSV VPCSGNDCPF AIHRKCAELD 120 CEDPASAYCP YCWLKYQATR STAVAAAKAR TSALFRNGDI ATARENIQLE NGPDKSLPMQ 180 LRENIHQIRK VIDQLKALNF QLDESVDQLN DTEKACGEAS VVVKDQFIDI ETSRNEASVV 240 VNDQPKRVLW TAKEEDMLRV GVEIFSTKIK KNMPWKKILE MGKGVFHKTR NPSDLKDKWR 300 NMLHM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1968s0060.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023646000.1	0.0	uncharacterized protein LOC17896988
TrEMBL	R0IF72	0.0	R0IF72_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.1968s0060.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7660	13	27

Link Out ? help Back to Top
Phytozome	Cagra.1968s0060.1.p