PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1961s0100.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 309aa    MW: 34190.8 Da    PI: 5.7348
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1961s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.8e-1262103346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++T eE++l+++ ++ +G++ W +Ia++++ g+t++++k +w++
  Cagra.1961s0100.1.p  62 SFTSEEEDLIIKMHAAMGSR-WQLIAQHLP-GKTEEEVKIFWNT 103
                          69******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-1242112IPR009057Homeodomain-like
PROSITE profilePS5129415.05355109IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-1658109IPR009057Homeodomain-like
SMARTSM007171.2E-1259107IPR001005SANT/Myb domain
PfamPF002492.1E-1162103IPR001005SANT/Myb domain
CDDcd001676.66E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVRSCSSKSK NPWTNEEDTT QKFAFASASK NGSAAPKKIG LRRCGKSCRV RKTDLSGTKN  60
ESFTSEEEDL IIKMHAAMGS RWQLIAQHLP GKTEEEVKIF WNTKLKKKLS EMGIDHVTHR  120
PFSHVLAEYG NINGGGNLNP SPLNQGRPLG PNHSLNDDAH QQQPDDSGDL MFHLQAIKLM  180
TESSNQGKPD STFVYASSSS SNSSPPLFSS TCSTIAQENS DINFTWSDFL LDQENFHENQ  240
QNHHPQELDN LFGNDFSEVA AATMANTSVI ASQIEEESSS NGFVESIIAK EKELFLGFPS  300
YLENPFHF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1961s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934660.0AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632801.10.0transcription factor MYB35
TrEMBLA0A178WJ390.0A0A178WJ39_ARATH; Uncharacterized protein
STRINGCagra.1961s0100.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.10.0MYB_related family protein