PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1961s0035.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 539aa MW: 60751.2 Da PI: 6.117 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.7 | 5.5e-10 | 371 | 408 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + Cagra.1961s0035.2.p 371 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 408 664459******************************88 PP | |||||||
2 | BELL | 121.8 | 2.8e-39 | 231 | 302 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er+elq+kk+kLl++++eVdkrY+qy++q+++++ssFe+vaglgsakpYts+Al++iSrhFr+L+dai+eqi Cagra.1961s0035.2.p 231 EREELQNKKNKLLTMVDEVDKRYNQYYHQMEALASSFEIVAGLGSAKPYTSVALNRISRHFRALRDAIKEQI 302 799********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.6E-51 | 156 | 300 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-46 | 162 | 298 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.455 | 349 | 412 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-10 | 352 | 416 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.19E-12 | 352 | 413 | No hit | No description |
SuperFamily | SSF46689 | 1.75E-17 | 353 | 419 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 355 | 418 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.7E-18 | 369 | 408 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MAVYYTSNVG CYQQEPIFLN HQQQQQQQAS SSSAAASFTV TGGDNVRNEM VFIPPTTGDA 60 VTVNGAVSSS DLSFHDGQGL SLSLGTQISV PPFQYHQYQL GFTQNPSLSV KETSTFNVDD 120 MSVKSKDILL LGQSDPSSGY AGNGFFNNYR YNETSGGFMS GVLRSRYLKP AQNLLDEVVS 180 VKKELNQMGK KKMKVNDFNN NGSKEIEGGR GGSGELSSDS NGKSIELSTN EREELQNKKN 240 KLLTMVDEVD KRYNQYYHQM EALASSFEIV AGLGSAKPYT SVALNRISRH FRALRDAIKE 300 QIQIIRDKLG EKGGESLDEQ QGERIPRLRY LDQRLRQQRA LHQQLGMVRP AWRPQRGLPE 360 NSVSVLRAWL FEHFLHPYPK ESEKIMLAKQ TGLSKNQVAN WFINARVRLW KPMIEEMYKE 420 EFGDESELLI SKSSQEPNST NQEDSSSQQH QQENNNNNLG YSSVDTTNIA FSSEIKPDRI 480 SGNDDEPQQQ QQQMNRSADY DTLMNYQGFG LDDYRYIGGS NQQESRFSNS HHLHDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 358 | 416 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 358 | 416 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1961s0035.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY570508 | 0.0 | AY570508.1 Arabidopsis thaliana BEL1-like homeodomain 5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307208.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_023646077.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Swissprot | Q9FXG8 | 0.0 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | R0GWD7 | 0.0 | R0GWD7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1961s0035.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 0.0 | BEL1-like homeodomain 10 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1961s0035.2.p |
Publications ? help Back to Top | |||
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