PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1961s0021.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 414aa    MW: 45235.3 Da    PI: 5.0022
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1961s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.3e-06361383426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++C++f  t  C++G++C + H+
  Cagra.1961s0021.1.p 361 KPCMYFNSTRGCRHGSNCLYQHD 383
                          69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.343357385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4361384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.87E-5362401IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSSLASHLG DDNLPPGFGG  60
PLSANEPQIK LSDIAVIKWK CSVRILLDEE WRVVAGEESN EVEAQNQREL RVLEAFYPGA  120
SSIPPNPSVP ADIDNSHYDD QQTIVIPILP VEDDDIALDS ASDLPTQSGA NVGTEPPIPD  180
ENTSTSSILP PGSDIMAALS AISNSKEQGS SMIDQDLLIK ILSNPKLVEN LVANRGSAGS  240
VSSNASSLYP SSTREANGVV TTTPASNGQF YPQPMVTQCP PMVYPPPAPS DQHNYGAPPA  300
RDASYYKNLI QQHGGERQET PPVQQHLGYR YNLQPGGPNP EMINSNINNQ RLRDAKPKIM  360
KPCMYFNSTR GCRHGSNCLY QHDATPYQPR NLNNGNINTS EMQNAKRMRF DRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1961s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215790.0AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10.
GenBankBT0255570.0BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307667.10.0zinc finger CCCH domain-containing protein 6 isoform X1
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLR0IPE40.0R0IPE4_9BRAS; Uncharacterized protein
STRINGCagra.1961s0021.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]