PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1954s0014.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 1059aa MW: 118938 Da PI: 8.5912

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1954s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ + R+++++ Cagra.1954s0014.1.p 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81 6*****************.******9.9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.86E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-5	46	82	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-7	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	3.09E-5	47	89	No hit	No description
SMART	SM01135	6.6E-35	603	690	IPR033471	DIRP domain
Pfam	PF06584	8.1E-21	603	667	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1059 aa Download sequence Send to blast
MAPSRSKKSK YKKTPRSKAV SPQKDDENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD 120 SEQENNEGTE TPRSAPKRSK VKSSDHPSTG LEGLSDRLQF RSSSGFLPSL KKRRTETLPR 180 AVGKRTPRIP ISYTLEKDTR ERYLSTVKRG LSQKGDDTDD DMEHEIALAL AEASQRGGST 240 KNSHTPNKKA KMYLSDNKGE RMRADIDLAI AKLRAGDMED VRCEPSSEST EADNADYSGG 300 RNDLTHGEGT SATEVQQTGR KYYRRRLGIK KEDAKEACSG TDEAPSLGAL DEKFEPERDE 360 KFLKLTYKFS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQVEEKRAGK 420 AYVSDLKGTD PASIKSSFHR NSKQRRSGSS DLCNTEAERK SPSSSLIRKR RQKTPPAKVT 480 KDELAASSQV IEPCNNKGIG EGNKPVGRGK RSASIRNSHE KKPVKPQDRT FSSNNIVEED 540 DSAPSNAVIK KQVNLPTKVR SRRKIVTEKP LTIDDGKNSE TLVKFSHCLS SERARRWCLF 600 EWFYSAIDYP WFARQEFVEY LDHVGLGHVP RLTRVEWGVI RSSLGKPRRF SAQFLKEEKE 660 KLYLYRDSDT ECMPLNPLEN MPASLAKHYA FSNYHIQNTS EEKMQERVKE STPEGHLKLS 720 CETGHLLSPP NYNISNSLKQ EKVDISSLNP QALDGVDEAL DLPLLNSQPA TIGHIQAREA 780 DVQALSELTR ALDKKELVLR ELKCMNNEVV ESQKDGHNAL KESESFKKQY AAVLFQLSEI 840 NEQVSLALLG LRQRNTYQEN VPYASIRHMS QSGEPDGQLT YIDSYASDTN GFHVSEIVET 900 SRIQARKMVY RAVQALASLR KDENNVVTME EVIDFVNNHL SIDQTEVSSV HQRQGAQDQR 960 LPFTLNPPSS TPANDIHLNP PDQNDLQIPS ELVSRCMATL LMIQRCTERQ FPPSEVAQVL 1020 DSAVASLQPC CSQNLPIYTE IQKCMGIIRN QILALVPS*

Sequence ? help Back to Top

Protein Sequence Length: 1059 aa Download sequence Send to blast

MAPSRSKKSK YKKTPRSKAV SPQKDDENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD  120
SEQENNEGTE TPRSAPKRSK VKSSDHPSTG LEGLSDRLQF RSSSGFLPSL KKRRTETLPR  180
AVGKRTPRIP ISYTLEKDTR ERYLSTVKRG LSQKGDDTDD DMEHEIALAL AEASQRGGST  240
KNSHTPNKKA KMYLSDNKGE RMRADIDLAI AKLRAGDMED VRCEPSSEST EADNADYSGG  300
RNDLTHGEGT SATEVQQTGR KYYRRRLGIK KEDAKEACSG TDEAPSLGAL DEKFEPERDE  360
KFLKLTYKFS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQVEEKRAGK  420
AYVSDLKGTD PASIKSSFHR NSKQRRSGSS DLCNTEAERK SPSSSLIRKR RQKTPPAKVT  480
KDELAASSQV IEPCNNKGIG EGNKPVGRGK RSASIRNSHE KKPVKPQDRT FSSNNIVEED  540
DSAPSNAVIK KQVNLPTKVR SRRKIVTEKP LTIDDGKNSE TLVKFSHCLS SERARRWCLF  600
EWFYSAIDYP WFARQEFVEY LDHVGLGHVP RLTRVEWGVI RSSLGKPRRF SAQFLKEEKE  660
KLYLYRDSDT ECMPLNPLEN MPASLAKHYA FSNYHIQNTS EEKMQERVKE STPEGHLKLS  720
CETGHLLSPP NYNISNSLKQ EKVDISSLNP QALDGVDEAL DLPLLNSQPA TIGHIQAREA  780
DVQALSELTR ALDKKELVLR ELKCMNNEVV ESQKDGHNAL KESESFKKQY AAVLFQLSEI  840
NEQVSLALLG LRQRNTYQEN VPYASIRHMS QSGEPDGQLT YIDSYASDTN GFHVSEIVET  900
SRIQARKMVY RAVQALASLR KDENNVVTME EVIDFVNNHL SIDQTEVSSV HQRQGAQDQR  960
LPFTLNPPSS TPANDIHLNP PDQNDLQIPS ELVSRCMATL LMIQRCTERQ FPPSEVAQVL  1020
DSAVASLQPC CSQNLPIYTE IQKCMGIIRN QILALVPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1954s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641610.1	0.0	protein ALWAYS EARLY 3
Refseq	XP_023641611.1	0.0	protein ALWAYS EARLY 3
Refseq	XP_023641612.1	0.0	protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	R0HWF7	0.0	R0HWF7_9BRAS; Uncharacterized protein
STRING	Cagra.1954s0014.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Cagra.1954s0014.1.p

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]