PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1914s0021.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 226aa MW: 25320.5 Da PI: 9.1103

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1914s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.3	2.5e-29	53	129	4	79
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 k++++++h kv+gR RRvRl ++caar+++L++eLG+++d++t+eWLlqqa+p i+ +tg++ + ++ ++es + Cagra.1914s0021.1.p 53 NKKPNKDRHRKVEGRIRRVRLHVLCAARIYQLTKELGHKTDGETLEWLLQQAEPWIISATGNGIRPVGATtTTESVV 129 699***********************************************************555553332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	22.611	57	111	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.7E-24	57	131	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
FLNLSPHNQD TDKKRKQTEV KGFDFVVGDK ELKRKRKKKE EEQIQLLGEK KNNKKPNKDR 60 HRKVEGRIRR VRLHVLCAAR IYQLTKELGH KTDGETLEWL LQQAEPWIIS ATGNGIRPVG 120 ATTTTESVVV SRPLITEDLM GCYHNTEGEA SRSQMAANGL WRNETGQNTT GGFDLNYGFG 180 FDFNGVSEMG FGNNQMPELE LGLSQDGNVG VLNPQVHQQM GQGQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	35	KRKQTEVKGFDFVVGDKELKRKR
2	28	35	DKELKRKR
3	31	38	LKRKRKKK
4	32	38	KRKRKKK
5	33	37	RKRKK
6	33	39	RKRKKKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1914s0021.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023634344.1	1e-144	LOW QUALITY PROTEIN: transcription factor TCP6
Swissprot	Q9FLM6	3e-92	TCP6_ARATH; Transcription factor TCP6
TrEMBL	R0H4K5	1e-132	R0H4K5_9BRAS; Uncharacterized protein
STRING	Cagra.1914s0021.1.p	1e-167	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	9e-91	TCP family protein

Link Out ? help Back to Top
Phytozome	Cagra.1914s0021.1.p

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]