PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1914s0012.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 842aa MW: 95864 Da PI: 7.6835

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1914s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	96.5	2.6e-30	73	167	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ++++ws++Dei +L G+++++++t++ + +d+dafy ++++s+ +++sk q++ K+++LKk+fk++++k+++g sf++++d++ f ls Cagra.1914s0012.1.p 73 SKMIWSKKDEIFILSGILEYQSETETCYNQDWDAFYGYIRESMRSDFSKAQIMGKVKKLKKRFKDNEAKINDGLRLSFTNTEDKELFRLS 162 789************************************************************************************* PP DUF573 93 kkiWg 97 k iW Cagra.1914s0012.1.p 163 KLIWV 167 **5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.6E-25	74	166	IPR007592	Protein of unknown function DUF573
SuperFamily	SSF53474	3.13E-16	254	369	IPR029058	Alpha/Beta hydrolase fold
Gene3D	G3DSA:3.40.50.1820	1.8E-12	255	516	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF12697	1.0E-7	302	511	IPR000073	Alpha/beta hydrolase fold-1
SuperFamily	SSF53474	3.13E-16	434	513	IPR029058	Alpha/Beta hydrolase fold
CDD	cd07987	1.79E-43	566	803	No hit	No description
Pfam	PF03982	1.2E-8	635	717	IPR007130	Diacylglycerol acyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016747	Molecular Function	transferase activity, transferring acyl groups other than amino-acyl groups

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MKRFNQGSDS RDSSNSQRCF EIRHNSNRPM LLSPHTREHE LDEDISGREA MLRRRKLPKT 60 TATLFPPSSS ASSKMIWSKK DEIFILSGIL EYQSETETCY NQDWDAFYGY IRESMRSDFS 120 KAQIMGKVKK LKKRFKDNEA KINDGLRLSF TNTEDKELFR LSKLIWVEKE TECVYEEKNK 180 DKIKSTQRLT SVAYGNRELG IGGRLKAAKN PYSFTEVARP EERKSLTDFF VEAGDFVRPD 240 GGDGGPPRWF SPLECGARAP GSPLLLYLPG IDGTGLGLIR QHKRLGEMFD IWCLHFPVKD 300 RTPARDLVKL IEKTVRSEHY RFPNRPIYIV GESIGASLAL DVAASNPDID FVLILANPVT 360 RFNSIMLQPL LSLLEILPDG LPSLILENFG LNQGSPLTKM FETMLNETDA AQMARGLLGE 420 LFATSSNLPT LIRIFPKDTL LWKLQLLKSA SASANSQMDT LNAQILILLS GRDQWLMNKE 480 DIERLHALPR CEVREFENSG QFLFLEDGVD LVSIIKRAYY YRHGKSFDYI SDYIPPSPFE 540 FKEYEESQRL LTAVTSPVYL STLSNGAVVR SLAGIPSEGP VLYVGNHMLL GMELHATAAH 600 FLKERNILLR GLAHPLMFTK TTGSKLPDVQ LYDLFRIVGA VPVSGMNFYK LLRSNAHVAL 660 YPGGVREALH RKGEEYKLFW PEHSEFVRIA SKFGAKIIPF GVVGEDDVFE MVLDYNDQMK 720 IPFLKSFIEE ITQDSVNLRN DEEGELGKQD LHVPGIIPKI PGRFYVYFGK PIETKGRKKE 780 LSDKENAHEV YLQVKSEVEN CMTYLKMKRE IDPYRNILPR LLYYLSHGLS SQIPTFDLRD 840 H*

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MKRFNQGSDS RDSSNSQRCF EIRHNSNRPM LLSPHTREHE LDEDISGREA MLRRRKLPKT  60
TATLFPPSSS ASSKMIWSKK DEIFILSGIL EYQSETETCY NQDWDAFYGY IRESMRSDFS  120
KAQIMGKVKK LKKRFKDNEA KINDGLRLSF TNTEDKELFR LSKLIWVEKE TECVYEEKNK  180
DKIKSTQRLT SVAYGNRELG IGGRLKAAKN PYSFTEVARP EERKSLTDFF VEAGDFVRPD  240
GGDGGPPRWF SPLECGARAP GSPLLLYLPG IDGTGLGLIR QHKRLGEMFD IWCLHFPVKD  300
RTPARDLVKL IEKTVRSEHY RFPNRPIYIV GESIGASLAL DVAASNPDID FVLILANPVT  360
RFNSIMLQPL LSLLEILPDG LPSLILENFG LNQGSPLTKM FETMLNETDA AQMARGLLGE  420
LFATSSNLPT LIRIFPKDTL LWKLQLLKSA SASANSQMDT LNAQILILLS GRDQWLMNKE  480
DIERLHALPR CEVREFENSG QFLFLEDGVD LVSIIKRAYY YRHGKSFDYI SDYIPPSPFE  540
FKEYEESQRL LTAVTSPVYL STLSNGAVVR SLAGIPSEGP VLYVGNHMLL GMELHATAAH  600
FLKERNILLR GLAHPLMFTK TTGSKLPDVQ LYDLFRIVGA VPVSGMNFYK LLRSNAHVAL  660
YPGGVREALH RKGEEYKLFW PEHSEFVRIA SKFGAKIIPF GVVGEDDVFE MVLDYNDQMK  720
IPFLKSFIEE ITQDSVNLRN DEEGELGKQD LHVPGIIPKI PGRFYVYFGK PIETKGRKKE  780
LSDKENAHEV YLQVKSEVEN CMTYLKMKRE IDPYRNILPR LLYYLSHGLS SQIPTFDLRD  840
H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1914s0012.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006283240.1	0.0	acyltransferase-like protein At3g26840, chloroplastic isoform X1
Swissprot	Q9LW26	0.0	Y3684_ARATH; Acyltransferase-like protein At3g26840, chloroplastic
TrEMBL	R0GYC2	0.0	R0GYC2_9BRAS; Uncharacterized protein
STRING	Cagra.1914s0012.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	2e-23	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Cagra.1914s0012.1.p

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653] Lippold F, et al. Fatty acid phytyl ester synthesis in chloroplasts of Arabidopsis. Plant Cell, 2012. 24(5): p. 2001-14 [PMID:22623494] Lohscheider JN,Friso G,van Wijk KJ Phosphorylation of plastoglobular proteins in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(13): p. 3975-84 [PMID:26962209]