PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1876s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 277aa    MW: 31087 Da    PI: 8.7484
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1876s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.6e-18208242135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C tt Tp+WR+gp g ktLCnaCG+++r+ +l
  Cagra.1876s0009.1.p 208 CTHCETTRTPQWREGPHGRKTLCNACGVRFRSGRL 242
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-17202252IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-15206239IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.28E-14206265No hitNo description
PROSITE profilePS5011411.965206238IPR000679Zinc finger, GATA-type
CDDcd002024.33E-16207258No hitNo description
PROSITE patternPS003440208233IPR000679Zinc finger, GATA-type
PfamPF003209.9E-17208242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSNVSWLPEE DFKGLADNFF DNLIEHIDDF PLEDIETADD EEDWKTGFQN LGPPPLDVLT  60
SLPSEFTCKG HRVRVQNTVP ILKQSSSSDV SSTDISPPDV KVSKLFQSSS PVSVLENTNG  120
SVLSQSQNRI QRLTFLVKGI RSKRKRPTTL KFFKSLGAEM SQHFVPDESK SETHLSSENS  180
VKKKRKSPAL SISYSPELIN SDGTVRKCTH CETTRTPQWR EGPHGRKTLC NACGVRFRSG  240
RLVPEYRPAS SPTFIPAMHS NSHRKIIEMR RKEEGQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1876s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294768.10.0putative GATA transcription factor 13
SwissprotQ9SKN61e-112GAT13_ARATH; Putative GATA transcription factor 13
TrEMBLR0FY420.0R0FY42_9BRAS; Uncharacterized protein
STRINGCagra.1876s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.11e-104GATA transcription factor 13