PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1876s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ARF | ||||||||
Protein Properties | Length: 700aa MW: 77230.4 Da PI: 7.57 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.4e-24 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF Cagra.1876s0007.1.p 115 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL 202 89****************************987555555..8************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 +++++ l+v+++r+ Cagra.1876s0007.1.p 203 --RSESGDLCVGIRRA 216 ..4589999****997 PP | |||||||
2 | Auxin_resp | 114.6 | 8.9e-38 | 276 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Cagra.1876s0007.1.p 276 AVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 359 56778899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-29 | 108 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-37 | 108 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.74E-21 | 114 | 215 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 115 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-21 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-22 | 115 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-32 | 277 | 359 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.289 | 586 | 674 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV 60 SVKFLADAET DEVFSKITLL PLPGNDLDLD NDAVLGLTPP PSDVNVNGNE KPASFAKTLT 120 QSDANNGGGF SVPRYCAETI FPRLDYTAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL 180 TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGG LGSNGLASDN NPYPGFSGFL 240 RDDETTSKLM MMKRNGGNEG NTAGAGRVRV EAVAEAVARA ACGQAFEVVY YPRASTPEFC 300 VKAADVRSAM RIRWCSGMRF KMAFETEDSS RISWFMGTVS AVQVADPIRW PNSPWRLLQV 360 AWDEPDLLQN VKRVSPWLVE LVSNMPAIHL SPFSPRKKIR MPQPFEFPFD GTKFPIFSPG 420 FASNGAGESV CYLSNDNNNA PAGIQGARQA QAQQLFGSPS PSLLSDLNLS SYSGNNKLQS 480 PAMFLSGFNP RHHYDSIVSR QGRDMENGNN ISCSLTMGNP SMVQDKKKSG GSVKTHQFLL 540 FGQPILTEQQ VMNRKRSLEE EAEAREEKGS AARGLTWNYG FQGLETGHCK VFMESEDVGR 600 TLDLSVIGSY QELYRKLAEM FHIEERLDLL THVVYQDANN VTKRIGDEPF SDFMRATKRL 660 TIKMDIGGDN VRKTWITGIR NGENGIDASA KTGPLSIFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-80 | 7 | 380 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1876s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF325073 | 0.0 | AF325073.1 Arabidopsis thaliana unknown protein (At2g28350) mRNA, complete cds. | |||
GenBank | AF336919 | 0.0 | AF336919.1 Arabidopsis thaliana clone C00034 (b) auxin response factor 10 (At2g28350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293778.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | R0FVP9 | 0.0 | R0FVP9_9BRAS; Auxin response factor | ||||
STRING | Cagra.1876s0007.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1876s0007.1.p |