PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1822s0030.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 338aa    MW: 36736.8 Da    PI: 9.8555
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1822s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.43.1e-3850110262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  Cagra.1822s0030.1.p  50 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRMK 110
                          67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.5E-3353108IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-2754108IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90154108IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105692IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MFGNCDQKKK KKMPIISSPN TNPLASMQSK NMIVASSHQQ QQQQQQPQQP QPQLKCPRCD  60
SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG GSYRKNKRMK RPSTTTATTA  120
STVSTTTSSS PNNSHQISHF SSMNHHHPLF YGLSDHVSSC NNLPMIPSRF SDSSKTSSSS  180
GLESEFLSSG FSSLSSLGLG LPHHMSHDHN INGSFVNNST TNKPFLLSGL FGSSMSSSSS  240
TLLQQQHKPI NNGSDMLGQS HLQTLASLQD LHVGGNCGDM NKEGKLDQIS GNINGFMSSS  300
SLDPSNYSSM WNNASVVNGA WLDPTNNNVG SSLTSLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1822s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2992720.0AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305356.20.0dof zinc finger protein DOF1.4
SwissprotQ9FZA41e-155DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLR0I7E40.0R0I7E4_9BRAS; Uncharacterized protein
STRINGCagra.1822s0030.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-135Dof family protein