PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1735s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 157aa    MW: 17852.3 Da    PI: 10.3068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1735s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-163281255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r +k +g+WvAeIr+p   +kr r +lg++ t   Aa+a++ a  +l+g
  Cagra.1735s0005.1.p 32 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYTTDVAAARAYDVAVFYLRG 81
                         69*****99.**********9...336**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.3793289IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-203290IPR016177DNA-binding domain
SMARTSM003802.4E-363295IPR001471AP2/ERF domain
PfamPF008479.8E-113381IPR001471AP2/ERF domain
PRINTSPR003676.6E-123344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-303390IPR001471AP2/ERF domain
CDDcd000184.06E-263391No hitNo description
PRINTSPR003676.6E-127191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEREREREQE ESTMRKRRQQ HQPHQEIAKR KPYRGIRMRK WGKWVAEIRE PNKRSRLWLG  60
SYTTDVAAAR AYDVAVFYLR GPSARLNFPD LLLQEEDHRS AASADMPAAL IREKAAEVGA  120
RVDALLTSAS KSPLKTADES SLSVIKPDLN QIPGDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152889163ATERF1
3gcc_A2e-152889163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318MRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1735s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305842.11e-110ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC305e-79RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLR0IJR31e-108R0IJR3_9BRAS; Uncharacterized protein
STRINGCagra.1735s0005.1.p1e-110(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.14e-64related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]