PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1725s0138.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 721aa MW: 81925.3 Da PI: 6.4769

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1725s0138.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	1.9e-23	101	184	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C+++g++ ++ + ++r+etrtgC+a++++++ ++++w+v++++l+HnH++ Cagra.1725s0138.1.p 101 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKMVKEAN-----SRRKETRTGCQAMIRLRLIDSDRWKVDQVKLDHNHSFD 184 9*************************************998877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-21	101	184	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-26	315	409	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.087	599	638	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-6	608	636	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-6	613	640	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MVEIGNSVYS PSDQSLSPHP HLCITMEEEG SEQVVVEDDL PIEDDDPDLG IDLDDDCDGL 60 LQIAANSTLE TETGIGCDAP PTRPAPAPGM EFESYDDAYS YYNSYARELG FAIRVKSSWT 120 KRNSKEKRGA VLCCNCQGFK MVKEANSRRK ETRTGCQAMI RLRLIDSDRW KVDQVKLDHN 180 HSFDPQRAHN SKSHKKNKSS SSASASASAS ASSYSNTQPQ PPPLHVQVRT IKLYRVVDTP 240 PPHGSSTSAG HPFHSSRPLD LPGGGFRHLQ DFFFHFQLTN PNFLYLMDLT DDGSLRTVFW 300 IDARARAAYS HFGDVVFFDT TCLSNSYKLP LVAFVGIDHH GDSILLGCAL LPDQSFDTYL 360 WLFRAWLTCM LGRPPQTFIT QQCKAMRTAV SQVFPRAHHR LSLTHVLHNI FQSVVQLQQD 420 SDLFRMVLNR VVYGCLKVEE FETAWEEMII RFGLTDHETI RYVFQDREQW APVYLKDTFL 480 AGALTFPLGD VAAPFIFSGY VHENTSLREF LEGYESFLDG KYTRQALCDS ESSKFIPELK 540 TSHPYESQMA NVFTVEIFRR FQDEVSAMSS CFGITQVHSN GSASSYVVKE REGEKVRDFE 600 VIYEASAEAQ VRCFCVCGGF SFNGYQCRHV LLVLSHNGLQ EVPPQYILRR WRKDVKRLYV 660 ADFGSGRVDI MNHDQWYEHL HRKAMQVVEQ GMRSKEHCRV AWEALKEGRN RVQFVTEKPS 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MVEIGNSVYS PSDQSLSPHP HLCITMEEEG SEQVVVEDDL PIEDDDPDLG IDLDDDCDGL  60
LQIAANSTLE TETGIGCDAP PTRPAPAPGM EFESYDDAYS YYNSYARELG FAIRVKSSWT  120
KRNSKEKRGA VLCCNCQGFK MVKEANSRRK ETRTGCQAMI RLRLIDSDRW KVDQVKLDHN  180
HSFDPQRAHN SKSHKKNKSS SSASASASAS ASSYSNTQPQ PPPLHVQVRT IKLYRVVDTP  240
PPHGSSTSAG HPFHSSRPLD LPGGGFRHLQ DFFFHFQLTN PNFLYLMDLT DDGSLRTVFW  300
IDARARAAYS HFGDVVFFDT TCLSNSYKLP LVAFVGIDHH GDSILLGCAL LPDQSFDTYL  360
WLFRAWLTCM LGRPPQTFIT QQCKAMRTAV SQVFPRAHHR LSLTHVLHNI FQSVVQLQQD  420
SDLFRMVLNR VVYGCLKVEE FETAWEEMII RFGLTDHETI RYVFQDREQW APVYLKDTFL  480
AGALTFPLGD VAAPFIFSGY VHENTSLREF LEGYESFLDG KYTRQALCDS ESSKFIPELK  540
TSHPYESQMA NVFTVEIFRR FQDEVSAMSS CFGITQVHSN GSASSYVVKE REGEKVRDFE  600
VIYEASAEAQ VRCFCVCGGF SFNGYQCRHV LLVLSHNGLQ EVPPQYILRR WRKDVKRLYV  660
ADFGSGRVDI MNHDQWYEHL HRKAMQVVEQ GMRSKEHCRV AWEALKEGRN RVQFVTEKPS  720
*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1725s0138.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009322	0.0	AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence.
GenBank	AC011717	0.0	AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300794.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	R0GD24	0.0	R0GD24_9BRAS; Uncharacterized protein
STRING	Cagra.1725s0138.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Cagra.1725s0138.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]