PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1695s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 134aa    MW: 14605.3 Da    PI: 8.7381
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1695s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.26.3e-107796120
                 GATA  1 CsnCgttkTplWRrgpdgnk 20
                         C+nC tt+TplWR+gp+g+k
  Cagra.1695s0026.1.p 77 CANCDTTSTPLWRNGPRGPK 96
                         ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-471106IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.26671124IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-57495No hitNo description
Gene3DG3DSA:3.30.50.106.8E-87596IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-77796IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGFSMFFSSE NDVVHHSSPY ASVDCTLSLG TPSTRLCNDD DERRFSSHTS NALGWDFLNG  60
AKKGGGGGGN NLLARRCANC DTTSTPLWRN GPRGPKPSIQ SQIKSKLNGF LKLLCYQDNY  120
IYKQIQSYVS ATQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1695s0026.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937211e-117AB493721.1 Arabidopsis thaliana At4g36620 mRNA for hypothetical protein, partial cds, clone: RAAt4g36620.
GenBankAL1615891e-117AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankAY5307461e-117AY530746.1 Arabidopsis thaliana At4g36620 gene, partial cds.
GenBankBT0295061e-117BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds.
GenBankCP0026871e-117CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997081e-117Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286076.23e-65GATA transcription factor 19
SwissprotQ6QPM22e-53GAT19_ARATH; GATA transcription factor 19
TrEMBLR0GQ277e-64R0GQ27_9BRAS; Uncharacterized protein
STRINGCagra.1695s0026.1.p8e-96(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.18e-50GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]