PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1681s0023.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 436aa MW: 49733.6 Da PI: 7.4225 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.6 | 3.6e-41 | 150 | 315 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssas 71 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++++t s +++s Cagra.1681s0023.1.p 150 PSRTDRHSKIKTAKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTlshqcgfssgdesqtrpalgSMDTSS 239 5799************************************************************88888776666665555554333333 PP TCP 72 eceaesssssasnsssg..........................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 + + ++ k+k+++ ++ +l+k++rakar+ra++rt ekm++k k Cagra.1681s0023.1.p 240 DL--------------YelasmwtvddrgsntnttvetrgnkvDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKMMMKMK 315 33..............0233333333333335566777888876666666788888888888*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-41 | 151 | 313 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.39 | 152 | 210 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.574 | 292 | 309 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MNNNTFSSTT TTINDDYMLF PYNDHYSSQA VLPFSPSSSF NDILIQSTSN TSNNHLDHHP 60 HQFLQPSPFS QFEFVPDCSL LASFLPHNNG HDDNNQEIIT NDNHHPSLLH PLNNTIGDQP 120 AEPSETITHI EDSQTISTSQ DQKMKKAKKP SRTDRHSKIK TAKGTRDRRM RLSLDVAREL 180 FGLQDMLGFD KASKTVEWLL TQAKPEIIKI AKTLSHQCGF SSGDESQTRP ALGSMDTSSD 240 LYELASMWTV DDRGSNTNTT VETRGNKVDG RSMRGKRKRP EPRTPILKKL SKDERAKARE 300 RAKDRTMEKM MMKMKGRSQL VKVVEEGVHH QGDQIVKNDI SKVNQSSFKV THCEEDIEEL 360 GKNDRFAVCN DFVMNKKDHI SNESYDIINK LNSPFPIHHH RSQGEANSIE QHQFTELHHF 420 LPKPRDLMYN YQNMC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1681s0023.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF062581 | 0.0 | EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642531.1 | 0.0 | transcription factor TCP18 isoform X1 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | R0G522 | 0.0 | R0G522_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1681s0023.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 0.0 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1681s0023.1.p |