PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0373.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 753aa    MW: 84379.6 Da    PI: 5.3187
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0373.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.22.5e-1163787481373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+
  Cagra.1671s0373.1.p 378 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMLVCPF 464
                          5789**************************************************************9999...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k + + aN+ +++ +e+++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+
  Cagra.1671s0373.1.p 465 KKAAIIFANHSMMRFTENANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPFEY 554
                          *************************************************************99*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +a+++e++++e+L++++gE ++Vn+ ++ ++llde+v ++s+rd+vLkl+++++P+v++ +    ++n++ F++rf eal +ysa+f
  Cagra.1671s0373.1.p 555 NA-IAQKWETIKVEDLKLRQGEYVVVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVF 643
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+ ++kl+re+e r + E+e+ grei nvvaceg+er+er et+++W++r+ +aGF+++pl+++ +++ kl + + +++ + v+++s++l
  Cagra.1671s0373.1.p 644 DMCDSKLARENEMRLMFEKEFYGREIINVVACEGTERVERPETYKQWQARMVRAGFRQLPLDKELMQNLKLKIDNGYDKNFDVDQNSNWL 733
                          *****************************************************************************999********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          ++gWk+r +++ S+W
  Cagra.1671s0373.1.p 734 LQGWKGRIVYASSVW 748
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.025352729IPR005202Transcription factor GRAS
PfamPF035148.7E-114378748IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MGSYPDGFPG SMDDFTSEFD LPASNNTIGL ANGFYLDEPF LDFVSMDPPP QSYPQNDDKA  60
ATGDLLSSPS DDADFSDSVL KYISQVLMEE DMEEKPCMFH DALALQAAEK SLYEALGEKY  120
PSSVDHPEKL LNDSPDGSFS GGAFSDYAST TTTTSSDSHW SVDGLESRSS WLQTPMPSNF  180
VFQSTSRSDS VTSGGGNSAV FRSGFGDDLV SNMFKDSDLA MQFKRGVEEA SKFLPKSSQL  240
FIDVDSYIPR DSGSKENGSE VFVKTEKKDE TEHHSSAPPP NRLTGKKTHW RDDDEDSVEE  300
RSNKQSAVYV EESELSEMFD KILVCSTGKP VCILDQKFPA KVETTQQVGV QSNGAKIRGK  360
KSNATSQSND AKKETADLRT LLVLCAQAVS VDDRRTANEM LRQIREHSSP LGNGSERLAH  420
YFANSLEARL AGTGTQIYTA LSSKKTSAAD MLKAYQTYML VCPFKKAAII FANHSMMRFT  480
ENANTIHIID FGISYGFQWP ALIHRLSLRP GGSPKLRITG IELPQRGFRP AEGVQETGHR  540
LARYCQRHNV PFEYNAIAQK WETIKVEDLK LRQGEYVVVN SLFRFKNLLD ETVLVNSPRD  600
AVLKLIRKVN PNVFIPAILS GNYNAPFFVT RFREALFHYS AVFDMCDSKL ARENEMRLMF  660
EKEFYGREII NVVACEGTER VERPETYKQW QARMVRAGFR QLPLDKELMQ NLKLKIDNGY  720
DKNFDVDQNS NWLLQGWKGR IVYASSVWVP SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5238575226382Protein SCARECROW
5b3h_A8e-5238575225381Protein SCARECROW
5b3h_D8e-5238575225381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0373.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankAK3167930.0AK316793.1 Arabidopsis thaliana AT1G07530 mRNA, complete cds, clone: RAFL05-11-B19.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306847.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLR0IBA10.0R0IBA1_9BRAS; Uncharacterized protein
STRINGCagra.1671s0373.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]