PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1670s0031.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 412aa    MW: 47216.9 Da    PI: 6.6777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1670s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.2e-5671361129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik+vd+yk+ePwdL++  k+ +ee+ ewyfFs++dkky+tg+r+nratk+g+Wkatg
  Cagra.1670s0031.1.p   7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDVDLYKIEPWDLQElcKIGNEEQsEWYFFSHKDKKYPTGTRTNRATKAGFWKATG 95 
                          69****************************.99**************954555554445******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk+++  +++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Cagra.1670s0031.1.p  96 RDKAIYI-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                          *******.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-605156IPR003441NAC domain
PROSITE profilePS5100559.5677156IPR003441NAC domain
PfamPF023651.4E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNSFSQVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLQELCKIGN  60
EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKKLAA TERKMGGYDS SPSHWYDDQL  180
SFMASEFDSS SSQQFLPSHH YNRHHPHQHT LPCGLNVSSA YAYNNNNNNP NLQCKQELEL  240
HYNHMIQHQQ QNHHLRESMF LQLPQLESPN SNGNSLPYGS SNTSKNTRNI GNLQQSSNLS  300
HEENLQQGNH SFSSLYYDQG VEQVTTDWRV LDKFVASQLS NEEAAAAASA SASSHQNNVK  360
NDTSNTAYDQ VIGEGINLPE NDSERVVEMG EEYKNSHAAS TSSSCQIDLW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-51715715169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1670s0031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071901e-148AC007190.4 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence.
GenBankCP0026841e-148CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301878.10.0NAC domain-containing protein 26
SwissprotF4HYV50.0NAC26_ARATH; NAC domain-containing protein 26
TrEMBLR0GGE40.0R0GGE4_9BRAS; Uncharacterized protein
STRINGCagra.1670s0031.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.10.0Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]