PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1642s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21689.7 Da PI: 8.5875 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.1 | 5.5e-42 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l Cagra.1642s0010.1.p 20 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAL 109 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +ael ++++e Cagra.1642s0010.1.p 110 QAELTAVRSE 119 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.907 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-42 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSGIRRPMSG PPGTLNTITP CAACKLLRRR CAQECPFSPY FSPHEPHKFA SVHKVFGASN 60 VSKMLMEVPE SQRADAANSL VYEANVRLRD PVYGCMGAIS ALQQQVQALQ AELTAVRSEI 120 LKYKQREAVA TLIVPSNSQV AGYHNSGGVS VIAPPPQRPS TPPQPTAAHP PPPPSSCVFS 180 QPTTRALEYG DIESENNSYF G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 12 | 123 | 3 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 12 | 123 | 3 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1642s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473844 | 0.0 | AB473844.1 Arabidopsis thaliana ASL11 mRNA for ASYMMETRIC LEAVES2-like 11 protein, complete cds. | |||
GenBank | BT025288 | 0.0 | BT025288.1 Arabidopsis thaliana At2g40470 mRNA, complete cds. | |||
GenBank | DQ446613 | 0.0 | DQ446613.1 Arabidopsis thaliana clone pENTR221-At2g40470 LOB domain protein 15/lateral organ boundaries domain protein 15 (At2g40470) mRNA, complete cds. | |||
GenBank | DQ653051 | 0.0 | DQ653051.1 Arabidopsis thaliana clone 0000012791_0000009246 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294938.1 | 1e-146 | LOB domain-containing protein 15 isoform X1 | ||||
Refseq | XP_023640895.1 | 1e-146 | LOB domain-containing protein 15 isoform X2 | ||||
Swissprot | Q8L5T5 | 1e-113 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | R0FYJ1 | 1e-145 | R0FYJ1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1642s0010.1.p | 1e-146 | (Capsella grandiflora) | ||||
STRING | XP_006294938.1 | 1e-146 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-106 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1642s0010.1.p |
Publications ? help Back to Top | |||
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