PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1637s0006.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NF-YC

Protein Properties

Length: 207aa MW: 23100.8 Da PI: 9.7697

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1637s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	50.1	6.2e-16	100	188	11	99
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + ++d k ++P+ ri++i+++d+ +i +a l+ ka e+fi +t ++ + + k++ ++ ++++v++ + ++fl d vp++ Cagra.1637s0006.1.p 100 GGVEDAKMFRFPMNRIRRIMRTDNSAPQIMQDAVFLVNKATEMFIERFTEEAYESSVQDKKKFIHYKHLSSVVSEDERYEFLADCVPEK 188 467899999*****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.95E-19	93	187	IPR009072	Histone-fold
Pfam	PF00808	1.1E-21	109	172	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-24	110	187	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MVSSKKPIEK KARSDGVSKT GGRSTRSSGS KAKKTTNKVN IVKKQPEIHE ISDSSSSDSV 60 EDANRRDEPK KSNGVVSKGR NGTGGGNSKK TSKNREEEDG GVEDAKMFRF PMNRIRRIMR 120 TDNSAPQIMQ DAVFLVNKAT EMFIERFTEE AYESSVQDKK KFIHYKHLSS VVSEDERYEF 180 LADCVPEKLK AEVALEEWER GMTDAG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1637s0006.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086815	0.0	AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence.
GenBank	BT025266	0.0	BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023645785.1	1e-147	nuclear transcription factor Y subunit gamma
TrEMBL	Q0WP19	1e-103	Q0WP19_ARATH; Uncharacterized protein At1g07980
STRING	Cagra.1637s0006.1.p	1e-149	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	3e-74	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Cagra.1637s0006.1.p