PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1582s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 386aa MW: 43223.6 Da PI: 4.6979 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.7e-20 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r +lg+f+taeeAa+a++aa+++++g Cagra.1582s0005.1.p 123 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 172 69*******.**********954...39************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 123 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-17 | 123 | 182 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-22 | 123 | 180 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.54 | 123 | 180 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-38 | 123 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-13 | 124 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MCGGAIISDF IPPPRSRRVT SEFIWPDLKN KGKVSKKRST KRSDFFDLDE EFEADFQGFK 60 DESSFDCDDD VYANVKPFVF NATTKPVASP ASAFVSTGFT SAKKTVESDD QAEKSSKRKR 120 KNQYRGIRQR PWGKWAAEIR DPRKGSREWL GTFDTAEEAA RAYDAAARRI RGSKAKVNFP 180 EAKIPSISQK RPSVRTSNLQ KPVAKPNQSP TLVQQPTYLS QQYCNNSFDN MGHESFGDVS 240 FMEEKPQMYN NQFGVTNSFD AGGNNGYQYF SSDQGSNSFD CSEFGWSDHG PKTPEISSML 300 VNNNQAPFIE ETNAAKKLKP NSEDGINHND ESDDLMVYLD NALWDTPLEV EAMLGPDAGA 360 VTQEEENPMD LWSLDDINFM LEGDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 123 | 180 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1582s0005.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297883.1 | 0.0 | ethylene-responsive transcription factor RAP2-2 | ||||
Swissprot | Q9LUM4 | 0.0 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | R0G5V1 | 0.0 | R0G5V1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1582s0005.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 0.0 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1582s0005.1.p |