PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.15822s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 389aa MW: 44323.9 Da PI: 8.1151 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.2 | 8e-27 | 293 | 374 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++ev+aLi ar+++e++++ + k+ W+e+s++m+erg+ers+k+Ckekwen+nk+y+++ eg +k+ +e+s+t +yf++l Cagra.15822s0012.1.p 293 RWPQEEVQALISARSYVEDKSGIN--KGSIWDEISARMKERGYERSAKKCKEKWENMNKYYRRVMEGGRKQ-PEHSKTRSYFEKL 374 8*******************9998..99*****************************************95.9**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.003 | 290 | 350 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.23E-5 | 291 | 371 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.3E-20 | 292 | 374 | No hit | No description |
CDD | cd12203 | 1.89E-22 | 292 | 354 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-5 | 292 | 348 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.561 | 293 | 348 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MELLAGDCRK RVGDDFSEDV DPFDGSDGGC GWMYGSRESG SHGNDDALAT LADLASPPQK 60 LKPIRCGVKP PSSSSEDRHP LDILAGTLDR LPEMGFGCFD TPLGSKIADV EQSGQLTRGF 120 SKGDDPLPLH IEFQARNRLS WDGVSLSSSV DSDSDSSPDV GKTVTGKRKR KTRVKLEHFL 180 EKLVGIMMKR QEKMHNQLIK VMEKMEGERI RREEAWRQQE IERMKQNEEA RKQEMARSLS 240 LISFIRSVIG DEIEIPKPSE FPQPLQQILP EKCESAQTQR ERTFRYSRSG GRRWPQEEVQ 300 ALISARSYVE DKSGINKGSI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVMEGGRK 360 QPEHSKTRSY FEKLGDFYKT NSSGEREE* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.15822s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025628 | 1e-141 | AB025628.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7. | |||
GenBank | CP002688 | 1e-141 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006279804.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | R0EUC7 | 0.0 | R0EUC7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.15822s0012.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9411 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.15822s0012.1.p |