PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1569s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 693aa    MW: 75786.4 Da    PI: 6.0427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1569s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06430450525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          +C++f   G+C++Gd+C F+H
  Cagra.1569s0001.1.p 430 PCNNFITKGFCHRGDSCLFSH 450
                          7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.178371398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6371396IPR000571Zinc finger, CCCH-type
SMARTSM003560.044372397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4375396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934400427IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025400426IPR000571Zinc finger, CCCH-type
SMARTSM003562.7428452IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6429455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.704430453IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MESSVATFPH QRRHMPNRTY RSLLHHLCSS FDREPRVSLA TPAVLQELVS RTEIAQVSPE  60
EVCKPPEDSS MVDSKSSEVS SGDSRGEKVE TISEEKSLML GDVFDGIDLQ DATVGSQHKD  120
FFDDFELMIN GSGEFVPESC VNLFGALDVN EYGDGVVASL DDIAKQPLDS VQNVVEKPNI  180
SIEVQVDPVE SDKKGEEVPK SVESNEIISF GVLEACNERD QREMELEKTV NSTQVLVDSL  240
PQIVEDDDVE EGELSGDDND YMLVGDDEPV ERHEESHVSQ EGIGNSHLTS HETFAKKLGV  300
EVSNVDNRAK KSDQTFSNEV KIDPETSIKK RSGPSKDAKA RKRANARKKR AQERIALGVK  360
KLKLKPVAPK PKPIKYCRHY VKGRCHEGDK CKFSHDTIPE TKSSPCCYFA TQSCMKGDDC  420
PYDHDLSKYP CNNFITKGFC HRGDSCLFSH KGAPQSASDT SNANVTASST NIASASFLLQ  480
KTNKQSVREA IARLPAIQAR VSSSVAFVKP LGQSNQRNSS DASSPKRINE HATPPQVPPL  540
RKTSVAPKGM SFLSLDNELK PSPASKPSTD SSDNQTLKQS QQGSFVPVVA PKGISFLSFA  600
SEEQKSTKRE PQEPASSRIL KTTPNSHIQS SLHSAMKLAA EFESAKAEKS SNDPVEAVNK  660
GEVKVNTTVT RNSGNVSSQI LEFLSSFSHG KN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328349KKRSGPSKDAKARKRANARKKR
2340362RKRANARKKRAQERIALGVKKLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1569s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280089.20.0zinc finger CCCH domain-containing protein 65
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLR0EV460.0R0EV46_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1569s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516