PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1554s0002.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 430aa MW: 46910.4 Da PI: 4.7398

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1554s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119	2.6e-37	122	220	2	98
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 lfqrlw++eDei lL+G++d+ ++++g s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f Cagra.1554s0002.1.p 122 LFQRLWTDEDEIELLRGFLDYiTNHRGNSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATF 211 79*****************9999999999******************************************************* PP DUF573 90 elskkiWgs 98 ++s+kiW++ Cagra.1554s0002.1.p 212 DISRKIWNQ 220 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.4E-34	123	219	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MASDQRDTVF SVESPDLDDG GGGGGGGGGE TESDEDVVIP EQNDVEEDDP EYEDLNSPSM 60 VSAISTAPSV IKSSSSTGTV TVALPAGSAV PVASIPSDSD QKWHRMTEIV HQRPPIDDSR 120 RLFQRLWTDE DEIELLRGFL DYITNHRGNS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL 180 RRLKKKYRNV MSKISSGKEV FFKSPHDQAT FDISRKIWNQ TGKIIGFEDN NVMDFEETNH 240 VNNHNTNNGG GSGFNISIAN ANVDVDLENG LEKKVTMSRK RSRSRIGKID EDKPILAPCD 300 GGLPNAVNLN ENVAAVGDFI DGRNLGGLIE ETVKNCVSPM IKEMMNGTTG MMMAAMGGFP 360 GGGGAHSLGV LSPMLIPSMN QGFGGKGAGD ERWRRQQILE LEVYSRRLEL VQEQIRATVN 420 ELKTMPNGG*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MASDQRDTVF SVESPDLDDG GGGGGGGGGE TESDEDVVIP EQNDVEEDDP EYEDLNSPSM  60
VSAISTAPSV IKSSSSTGTV TVALPAGSAV PVASIPSDSD QKWHRMTEIV HQRPPIDDSR  120
RLFQRLWTDE DEIELLRGFL DYITNHRGNS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL  180
RRLKKKYRNV MSKISSGKEV FFKSPHDQAT FDISRKIWNQ TGKIIGFEDN NVMDFEETNH  240
VNNHNTNNGG GSGFNISIAN ANVDVDLENG LEKKVTMSRK RSRSRIGKID EDKPILAPCD  300
GGLPNAVNLN ENVAAVGDFI DGRNLGGLIE ETVKNCVSPM IKEMMNGTTG MMMAAMGGFP  360
GGGGAHSLGV LSPMLIPSMN QGFGGKGAGD ERWRRQQILE LEVYSRRLEL VQEQIRATVN  420
ELKTMPNGG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1554s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023636557.1	0.0	probable transcription factor At5g28040
Swissprot	F4K5T4	0.0	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	R0H766	0.0	R0H766_9BRAS; Uncharacterized protein
STRING	Cagra.1554s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	0.0	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Cagra.1554s0002.1.p

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]