PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.15158s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 532aa    MW: 60402.3 Da    PI: 9.48
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.15158s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-1423991296
                          HTT-EE--HHH.HTT..---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                          + + l +p  f+ +h  g++ e+++t  l++  +   +W+vk+  ++++    lt GW +Fv a++L++gD+vvF+++g    elv++v
  Cagra.15158s0004.1.p 23 S-NHLDIPVAFFLKHlvGSN-EGKTTAELRSDASekITWKVKI--DGRR----LTHGWDGFVIAHDLRVGDIVVFRHEG----ELVFHV 99
                          3.4488**********7555.5667888888554338899999..8888....***********************765....444444 PP
2B359.18.1e-19140232397
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                             ++++++l+++ ++lpk+fa+++g+   ++ +++l +e+g+sW++ l++  + s r+ +++GW++F+ ang k gD + Fkl++ +e+
  Cagra.15158s0004.1.p 140 VLTVTASNLRRDTVYLPKEFARSNGLM--NKYQIVLINEKGESWTIDLRHeLNPSVRFNMRRGWRSFCVANGKKPGDLIAFKLVQ-NEE 225
                           5567999*****************877..4568***************997666777**************************99.555 PP

                           ..EEEEE CS
                    B3  91 elvvkvf 97 
                           ++v+k+f
  Cagra.15158s0004.1.p 226 TPVLKLF 232
                           5888876 PP
3B364.91.2e-20267355596
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                            ++ ++l+++r++lpk+f+e++g+ k  ++++ l++e+g+sW++ ++++ +sgr++  +GWk+F+ ang k gD+++Fkl+++ ++ +v
  Cagra.15158s0004.1.p 267 RVTTSNLSRDRMYLPKTFIESNGLLK--KFQMLLMNEEGESWKIDVKHEAYSGRFLTIRGWKSFCLANGKKPGDSFTFKLVEN-DEVPV 352
                           56889999**************9995..568************************999*********************9985.44466 PP

                           EEE CS
                    B3  94 vkv 96 
                           +++
  Cagra.15158s0004.1.p 353 LRL 355
                           655 PP
4B344.92.1e-144485301499
                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           + l lp  f++++g++k++  ++t+ d+ g +W+  l ++k+sg++ l++G k+F++ ng+k ++++v++l++ +++ + +k+++k
  Cagra.15158s0004.1.p 448 SKLNLPLGFMKAIGINKAG--KITMVDRYGGRWSTPLLMDKRSGTMSLGRGSKGFCEINGVKMNESFVLELIW-EDTVPILKFCSK 530
                           5689************888..7***************************************************.777799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-198107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-189111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.89811105IPR003340B3 DNA binding domain
CDDcd100175.00E-1412100No hitNo description
SMARTSM010196.1E-2114105IPR003340B3 DNA binding domain
PfamPF023625.6E-102398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-19136230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.368138235IPR003340B3 DNA binding domain
CDDcd100178.22E-17138233No hitNo description
SuperFamilySSF1019361.57E-19138233IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-28138235IPR003340B3 DNA binding domain
PfamPF023624.2E-17139232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-20257354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-21258354IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-18263357No hitNo description
PROSITE profilePS5086314.438263359IPR003340B3 DNA binding domain
SMARTSM010193.2E-29264359IPR003340B3 DNA binding domain
PfamPF023626.0E-19267356IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-13432530IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.206435530IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-15435530IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-18439531IPR003340B3 DNA binding domain
PfamPF023621.6E-12448530IPR003340B3 DNA binding domain
CDDcd100173.69E-10448529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVNQPLYSPI NPHFFQPLLP GYSNHLDIPV AFFLKHLVGS NEGKTTAELR SDASEKITWK  60
VKIDGRRLTH GWDGFVIAHD LRVGDIVVFR HEGELVFHVS ALGPSCCQIQ YTEDKREKKQ  120
SLKREAADSE PDHSLDSCFV LTVTASNLRR DTVYLPKEFA RSNGLMNKYQ IVLINEKGES  180
WTIDLRHELN PSVRFNMRRG WRSFCVANGK KPGDLIAFKL VQNEETPVLK LFPMDSEVPE  240
ILENLPRKRS GRSEVDDSPD CSSFVARVTT SNLSRDRMYL PKTFIESNGL LKKFQMLLMN  300
EEGESWKIDV KHEAYSGRFL TIRGWKSFCL ANGKKPGDSF TFKLVENDEV PVLRLFPFNS  360
EDRLKLEPSN DTRQGKCLKA TKKEFLGVEA TEKEFLGVEV RRNDSTARVE EPTNDYRRKA  420
IKQEYVSTKG NSSRSQNRLV TLTLTPASKL NLPLGFMKAI GINKAGKITM VDRYGGRWST  480
PLLMDKRSGT MSLGRGSKGF CEINGVKMNE SFVLELIWED TVPILKFCSK V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.15158s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293983.10.0B3 domain-containing protein REM10
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLR0FW980.0R0FW98_9BRAS; Uncharacterized protein
STRINGCagra.15158s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]