PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1508s0087.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 445aa    MW: 50050.8 Da    PI: 7.0135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1508s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000143343671553
                          HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                  HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                          ++++++ +L++++ +      +K + a++L++A+ YI+ 
  Cagra.1508s0087.1.p 334 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 367
                          7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.994319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.40E-4333373No hitNo description
SuperFamilySSF474594.84E-9334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-7334376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLREECTPSS SWWEDVQHHH NDHANSINST SFYHKSSNNN SNANVSCEED NLSISNVNAS  60
NRLDLTAESS NNHHHSLSAP SSSTDELLRD HVVSSHNQLW SLAFLPGRSL SDQMMDHHHH  120
HHHNHNHHLT SSRNSSTTSE LPSFEPACDN GNGWIYDTNQ VRYDQSSDQR LSKLTDLVGK  180
HWSIAPPNNP DINHNLHHHF DHDHSQTNDD VSMYRQALEV KNEETLCYNN GSTGAGGGSL  240
FHNPIESSRG FLDIRLSRPL SDINPSFKPC FKALNLSEFN KKEHQTASLA TVRLGTTNAG  300
KKKRCEEVSD EVSKKAKCGG GSTLSPEKEL PKAKLRDKIT TLQQIVSPFG KTDTASVLQE  360
AITYINFYQE QVKLLSTPYM KNSSVKDPWG GWDREDHNKR GPRQHLDLRS RGLCLVPISC  420
TPIAYRDNSA TDYWSPSYRG SLYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1508s0087.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307534.10.0transcription factor bHLH111
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLR0GWX40.0R0GWX4_9BRAS; Uncharacterized protein
STRINGCagra.1508s0087.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein