PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1508s0074.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1100aa MW: 120680 Da PI: 8.0505 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 22 | 3.4e-07 | 321 | 339 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++ CH GpC++C+ Cagra.1508s0074.1.p 321 CGRHRCERACHVGPCDSCQ 339 ******************6 PP | |||||||
2 | zf-NF-X1 | 17.4 | 9.6e-06 | 541 | 559 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+ lCH+G CppC Cagra.1508s0074.1.p 541 CGQHSCETLCHTGHCPPCL 559 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.41E-6 | 144 | 213 | No hit | No description |
PROSITE profile | PS50016 | 8.849 | 151 | 212 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 154 | 209 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.716 | 154 | 210 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 1.69E-5 | 243 | 304 | No hit | No description |
SMART | SM00438 | 0.023 | 266 | 284 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.2 | 268 | 283 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.96E-12 | 311 | 359 | No hit | No description |
SMART | SM00438 | 3.3E-4 | 321 | 340 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.3E-5 | 321 | 338 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.02E-7 | 375 | 420 | No hit | No description |
SMART | SM00438 | 0.002 | 385 | 404 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.8E-4 | 385 | 402 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.81E-13 | 433 | 481 | No hit | No description |
SMART | SM00438 | 0.0049 | 443 | 462 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0031 | 443 | 460 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 230 | 501 | 537 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 501 | 512 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.69E-8 | 534 | 583 | No hit | No description |
SMART | SM00438 | 0.0038 | 541 | 560 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.1E-4 | 541 | 558 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.97E-6 | 588 | 635 | No hit | No description |
SMART | SM00438 | 0.13 | 598 | 616 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 23 | 598 | 615 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.018 | 651 | 682 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0099 | 651 | 666 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 9.70E-5 | 680 | 729 | No hit | No description |
Pfam | PF01422 | 13 | 684 | 710 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.039 | 691 | 712 | IPR000967 | Zinc finger, NF-X1-type |
Gene3D | G3DSA:3.30.70.330 | 5.7E-4 | 938 | 982 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1100 aa Download sequence Send to blast |
MSSQVRRDRR ERPRFTSRTT QQTWVPRGTS STSVVVNETP FPLDANTNSG SLDDAGARTG 60 PVYQQRQHYE SAPLLNNPGP PSYSRQRRNN ASRPVLDNRQ RGGFRGRLPR TGNEGTGLDK 120 ERNEHNENTV MTDPNLPQLL QEIQDKLTKG SIECMICYDM VRRSANIWSC SSCYSIFHLN 180 CIKKWARAPT SVDLLADKNQ GSNWRCPGCQ FVQLTSSKEI QYRCFCGKRK DPPSDPYLTP 240 HSCGDICGKP LEKEFATAAT VKENTCPHVC VLQCHPGPCP PCKAFAPPRN CPCGKKMIRT 300 RCSERKYDLT CGQSCDKLLN CGRHRCERAC HVGPCDSCQV QVNASCFCKK TVESVICGEM 360 NVKGEVTAED GVFSCKLNCR KQLECGNHEC RDVCHPGPCG DCEFLPSRIK ACYCGKTSLE 420 EERQSCLDPI PSCSNICSKL LPCGLHNCNE MCHPGGCSPC LVQVRQKCRC GSTSRTVECY 480 KTVSETEKFI CAKPCGRKKN CGRHRCSERC CPLLNHAKND DLSGDSDLHF CHIPCGKRLR 540 CGQHSCETLC HTGHCPPCLE MIFTDLACAC GKTSIPPPLP CGTPVPSCQL PCSVPQPCGH 600 SATHGCHFGD CMPCSVPVEK KCIGGHVVLR NIPCGLKDIR CNKICGKTRC CGMHACARTC 660 HPEPCDNGGN ASVTGLRVTC GQTCGAPRRD CRHTCAALCH PSAPCPDQRC EFPLKITCSC 720 GRITATVPCD AGGSAGGFSG DSIYETSILQ KLPVPLQPVE SNGNRIPLGQ RKLTCDEECA 780 KLERKRVLQD AFDITPPNLD ALHFGENTAM TEVILDLYRR DPKWVLAVEE RCKFLVLGKA 840 RGSTISSLKL HIFCTMEKDK RDAVRLIAER WKLAVSNAGW EPKRFVVVYV TQKSKPPTRI 900 IGVKGVISVG APHAPAFDPL VDMDSRLVVC FFDLPREANI SALVLRFGGE CELVWLNDKN 960 ALAVFHDPAR AATAMRRLEH GSVYQGAVVV VQNPGQSPSL SNAWGIPGSS VQKGNPWNKA 1020 VVKELDDSWE TEDSPIGGSM WKTAKDSELI TPNRWTILES DKAVSVEPLA QTEGTSSSKA 1080 AGKQPEETSV VDDWEKVCD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1508s0074.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306627.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | R0ILT0 | 0.0 | R0ILT0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1508s0074.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1508s0074.1.p |