PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1472s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 401aa MW: 43693 Da PI: 6.8246 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.8 | 2.7e-36 | 51 | 169 | 2 | 106 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssss 69 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++ + Cagra.1472s0007.1.p 51 TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAELppwdpadalrqhaaaanakprkT--- 137 79**************************************************************64333333333222222222220... PP TCP 70 aseceaesssssasnsssg.............kaaksaakskksqksaas 106 + +++++++++ ++++++s Cagra.1472s0007.1.p 138 ------------------KtlispqpplppphHEETEHHHQIGEEDNESS 169 ..................13443444444443223333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-33 | 51 | 167 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.272 | 53 | 111 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MAANHHLVDS PSPPPLLEMR HNQSAFTTAA ENGGGCGEIV EVQGGHIVRS TGRKDRHSKV 60 CTAKGPRDRR VRLSAPTAIQ FYDVQDRLGF DRPSKAVDWL IKKAKSAIDD LAELPPWDPA 120 DALRQHAAAA NAKPRKTKTL ISPQPPLPPP HHEETEHHHQ IGEEDNESSF LPASMDSDSI 180 ADTIKSFFPV ASTQQSYHQQ PPSRATTQNQ DLLRLSLQSF QNGPPFADQT EPVLFSGQSN 240 PLGFDSSTAS WDQNHQSPEF GKIQRLVTWN NGGAADSAGG GGGGFVFASP SSFQPVYSHQ 300 SQLLSQRGPL QSINTPMIRA WFDPHHHHHH PQSMTTDDLH HHHHPYHVPT GIHQSAIPGI 360 AFASSGEFSG GFRIPARFQG EQEEQGGDNK PSSASSDSRH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 58 | 111 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 58 | 111 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1472s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC008007 | 0.0 | AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence. | |||
GenBank | AY099678 | 0.0 | AY099678.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds. | |||
GenBank | BT000266 | 0.0 | BT000266.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304984.1 | 0.0 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 0.0 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | R0GPM5 | 0.0 | R0GPM5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1472s0007.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 0.0 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1472s0007.1.p |
Publications ? help Back to Top | |||
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