PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1443s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 657aa MW: 74376.6 Da PI: 6.5159 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.1 | 3.4e-53 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgk Cagra.1443s0001.1.p 13 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGK 101 699************************999.99***************6448899999******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s k+ +g+kktLvfy+grap+ge+t+W+mheyr+ Cagra.1443s0001.1.p 102 DRTIKS-KKVIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 140 ******.9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-63 | 6 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.198 | 13 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-27 | 14 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
MTTEQALLSM EALPLGFRFR PTDEELINHY LRLKINGRDS EVRVIPEIDV CKWEPWDLPG 60 LSVIKTDDQE WFFFCPRDRK YPSGHRSNRA TDIGYWKATG KDRTIKSKKV IIGMKKTLVF 120 YRGRAPRGER TNWIMHEYRA TDKELDGTGA GQNPFVLCRL FHKPSDSCDI ANCDGIENVN 180 TTPTTTRCSP DDTSSEMVQE TATSRVHALN RSDDTERCLS DKSNDVKPDV SVINNTTSTN 240 HAESSRAKDR GLGKTVVEEN PPARDNLTHY GSSFTQMNDR TYHPSHSSID FAASHIDSMY 300 SSDFGNFDYG LHFQDGAAEQ DASLTDVLDE VFHINNDSST ERKDFALPNM MHWPGNTRLL 360 STEYPFRKDA VSFVDGSAEV SGSQFVPENI APRWVSQHRV DSKEVTEIQS SSGSSRTVTP 420 LHSNVSGQYA SASYASIDPF NYNVNNPEQS SFEQSQTDRK ISPSDISEFK GRSRESQTNQ 480 DFVVDQGTAP RRIRLQIELP LTPVNHKKDD NYEEDEVQSA MSKVVEVNER SFLNRDDTLS 540 ESAKLKTQGT AQRRIRLQTR LRKPPVTLNN PRKHLNCSNE EASHREMQEK EDVSSSSSSS 600 SWQKEKKIVK KSLVQYSSMV IIMVVIVVLV GVWKESRDAK CSFLFHHLDS FKGMFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-46 | 8 | 167 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 8 | 167 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 8 | 167 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 8 | 167 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 8 | 167 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 8 | 167 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 8 | 167 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 8 | 167 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 8 | 167 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 8 | 167 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 8 | 167 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 8 | 167 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-46 | 8 | 167 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 8 | 167 | 12 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1443s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306958.1 | 0.0 | NAC domain-containing protein 14 isoform X2 | ||||
Swissprot | B5X570 | 0.0 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
TrEMBL | R0GVM4 | 0.0 | R0GVM4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1443s0001.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5594 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 0.0 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1443s0001.1.p |