PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.14303s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31799.9 Da PI: 5.6828 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ + G +W++ ++ g++R++k+c++rw +yl Cagra.14303s0002.1.p 14 KGPWTAEEDKKLINFILNNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++ Cagra.14303s0002.1.p 70 LSEAEEQLVIDLHALLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 5899***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-21 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.982 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-26 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.608 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.99E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRQPCCDKL MVKKGPWTAE EDKKLINFIL NNGHCCWRAL PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL SEAEEQLVID LHALLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLKME 120 IDPLTHQPLN KVSTGKEFDD KSETSSKAGN VKRSDDKSLE TDESTKNTID ETSTITHQNS 180 SKDEYELLGD IIDHKDEDLF NILWTNDEPP LVDVSWSNSI GGAAAVVAAD KINMAAAEDL 240 PTWPLEEKNG DNWMFLDYCK DFGVQDFGFC QSSMETGYKD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.14303s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175999 | 0.0 | AF175999.1 Arabidopsis thaliana putative transcription factor (MYB42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289620.1 | 0.0 | protein ODORANT1 | ||||
Swissprot | Q50EX6 | 1e-87 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | R0HFK3 | 0.0 | R0HFK3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.14303s0002.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12350.1 | 1e-160 | myb domain protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.14303s0002.1.p |
Publications ? help Back to Top | |||
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