PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1427s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 322aa    MW: 34581.2 Da    PI: 7.4996
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1427s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.4e-393293263
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                         k+++l+cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+PvGgg rk k+sss
  Cagra.1427s0001.1.p 32 KDQSLNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTQGGSLRNIPVGGGIRKTKRSSS 93
                         6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-312184IPR003851Zinc finger, Dof-type
PfamPF027013.3E-333390IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6123690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNEIVTNSCL KHPPPPPPPP ATPAERKARP EKDQSLNCPR CNSLNTKFCY YNNYSLTQPR  60
YFCKDCRRYW TQGGSLRNIP VGGGIRKTKR SSSSPSSSSS SSSPKKPPLA INSNSPAPNP  120
KTGEAAAKVQ DLTFSPGFGN AHEVKDLNLA FSQGFGIAYH QHHTIPEFLQ VTPSSSSSMK  180
NNNNPLVSTS SALELLGISA SSNSRPAFMS FPNVHDSSVY TASGFGLSYP QFQEFMRPAL  240
GFSLDGGDPL HQEEGSSGTT TATTNSGRPL LPFESLKLPV SSPSTNSGGN VKEDDDHSDR  300
GQEEKEEGEA DQSVGFWNMA C*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1427s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0848981e-103AY084898.1 Arabidopsis thaliana clone 120488 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023643464.10.0dof zinc finger protein DOF1.8
SwissprotQ84JQ81e-148DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLR0HU720.0R0HU72_9BRAS; Uncharacterized protein
STRINGCagra.1427s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-136Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]