PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.14026s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 379aa    MW: 41525.1 Da    PI: 5.6702
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.14026s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.4e-06444539
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          +C+ ++e++   +C+++  +lC +C  + H+       H++
  Cagra.14026s0004.1.p  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                          6*****************************65677777776 PP
2zf-B_box23.11.6e-074690440
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvv 40
                           +C++++ ++++  C d ++ lC++C   +H g        H+++
  Cagra.14026s0004.1.p 46 LICERCNAQPASVRCSDERVSLCQNCDWVGHDGtnatttshHKRQ 90
                          68*****************************77888888877766 PP
3CCT59.51.2e-20321364144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  Cagra.14026s0004.1.p 321 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 364
                           99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000211.48E-7447No hitNo description
SMARTSM003368.2E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.2864392IPR000315B-box-type zinc finger
CDDcd000218.54E-64792No hitNo description
SMARTSM003364.64892IPR000315B-box-type zinc finger
PROSITE profilePS5101715.1321363IPR010402CCT domain
PfamPF062032.5E-15321363IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
SDERVSLCQN CDWVGHDGTN ATTTSHHKRQ TINCYSGCPS SAELSSIWSF CLDLNMSSAG  120
ESACEQGMGL MTIDEVPGDK SCVQNVNVDK PGTSSAAQGM DRSSVPENTS LAKEVGVCED  180
DFNGNLNMEE VDMALENYEE LFGAAFNSSR YLFEHGGIGS LFDKDEPPEG SIQGNSMQQP  240
AMSNNASADD SFMTCRTEPI ICYSSKPAHS NISFSGVTGE SNAGDFQDCG ASAMKQLSNE  300
PQAWCPPTSQ EIIASSHATT RNNAVMRYKE KKKARKFDKR VRYVSRKERA DVRRRVKGRF  360
VKSGEAYDYD PMSPARSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.14026s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0399570.0AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
GenBankAY1426070.0AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281967.10.0zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLR0GR910.0R0GR91_9BRAS; Uncharacterized protein
STRINGCagra.14026s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]